Magnesium in PDB 5l8r: The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Enzymatic activity of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
All present enzymatic activity of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.:
1.97.1.12;
Protein crystallography data
The structure of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution., PDB code: 5l8r
was solved by
Y.Mazor,
A.Borovikova,
I.Caspy,
N.Nelson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.91 /
2.60
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
189.611,
200.994,
212.943,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.1 /
23.2
|
Other elements in 5l8r:
The structure of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
156;
Binding sites:
The binding sites of Magnesium atom in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
(pdb code 5l8r). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 156 binding sites of Magnesium where determined in the
The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution., PDB code: 5l8r:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 1 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg504
b:0.0
occ:1.00
|
MG
|
1:CLA504
|
0.0
|
0.0
|
1.0
|
ND
|
1:CLA504
|
2.0
|
0.7
|
1.0
|
NB
|
1:CLA504
|
2.0
|
0.1
|
1.0
|
NC
|
1:CLA504
|
2.1
|
0.3
|
1.0
|
NA
|
1:CLA504
|
2.2
|
0.3
|
1.0
|
OE2
|
1:GLU184
|
2.9
|
0.9
|
1.0
|
C4D
|
1:CLA504
|
2.9
|
0.4
|
1.0
|
C4B
|
1:CLA504
|
3.0
|
0.8
|
1.0
|
C1C
|
1:CLA504
|
3.0
|
0.8
|
1.0
|
C1B
|
1:CLA504
|
3.0
|
0.1
|
1.0
|
C1D
|
1:CLA504
|
3.1
|
0.1
|
1.0
|
C4A
|
1:CLA504
|
3.1
|
0.6
|
1.0
|
C4C
|
1:CLA504
|
3.2
|
0.7
|
1.0
|
C1A
|
1:CLA504
|
3.2
|
0.6
|
1.0
|
CD
|
1:GLU184
|
3.3
|
0.7
|
1.0
|
CHC
|
1:CLA504
|
3.3
|
0.8
|
1.0
|
CHB
|
1:CLA504
|
3.4
|
0.7
|
1.0
|
CHA
|
1:CLA504
|
3.5
|
0.5
|
1.0
|
CHD
|
1:CLA504
|
3.5
|
0.3
|
1.0
|
OE1
|
1:GLU184
|
3.7
|
0.9
|
1.0
|
C38
|
1:LUT501
|
3.9
|
0.5
|
1.0
|
CG
|
1:GLU184
|
4.0
|
0.3
|
1.0
|
C3D
|
1:CLA504
|
4.2
|
0.6
|
1.0
|
C3B
|
1:CLA504
|
4.2
|
0.0
|
1.0
|
NE
|
1:ARG85
|
4.3
|
0.1
|
1.0
|
C2B
|
1:CLA504
|
4.3
|
0.1
|
1.0
|
C2D
|
1:CLA504
|
4.3
|
0.8
|
1.0
|
C2C
|
1:CLA504
|
4.3
|
0.2
|
1.0
|
C3C
|
1:CLA504
|
4.4
|
0.8
|
1.0
|
C3A
|
1:CLA504
|
4.5
|
0.0
|
1.0
|
C2A
|
1:CLA504
|
4.5
|
0.3
|
1.0
|
NH2
|
1:ARG85
|
4.8
|
0.0
|
1.0
|
CB
|
1:GLU184
|
4.8
|
0.3
|
1.0
|
CZ
|
1:ARG85
|
4.8
|
0.6
|
1.0
|
O2A
|
1:CLA504
|
4.8
|
0.6
|
1.0
|
CD
|
1:ARG85
|
4.9
|
0.3
|
1.0
|
CG
|
1:ARG85
|
4.9
|
1.0
|
1.0
|
CBD
|
1:CLA504
|
4.9
|
0.9
|
1.0
|
C28
|
1:LUT501
|
5.0
|
0.1
|
1.0
|
|
Magnesium binding site 2 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 2 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg505
b:0.4
occ:1.00
|
MG
|
1:CLA505
|
0.0
|
0.4
|
1.0
|
ND
|
1:CLA505
|
2.0
|
0.4
|
1.0
|
NB
|
1:CLA505
|
2.0
|
0.7
|
1.0
|
NC
|
1:CLA505
|
2.1
|
0.9
|
1.0
|
NA
|
1:CLA505
|
2.2
|
0.7
|
1.0
|
OD1
|
1:ASN187
|
2.8
|
0.2
|
1.0
|
C4D
|
1:CLA505
|
2.9
|
0.8
|
1.0
|
C4B
|
1:CLA505
|
3.0
|
0.6
|
1.0
|
C1C
|
1:CLA505
|
3.0
|
0.5
|
1.0
|
C1B
|
1:CLA505
|
3.1
|
0.6
|
1.0
|
C1D
|
1:CLA505
|
3.1
|
0.9
|
1.0
|
C4A
|
1:CLA505
|
3.1
|
0.5
|
1.0
|
C4C
|
1:CLA505
|
3.2
|
0.9
|
1.0
|
C1A
|
1:CLA505
|
3.2
|
0.5
|
1.0
|
CHC
|
1:CLA505
|
3.3
|
0.3
|
1.0
|
CHB
|
1:CLA505
|
3.4
|
0.3
|
1.0
|
CHA
|
1:CLA505
|
3.5
|
0.6
|
1.0
|
CHD
|
1:CLA505
|
3.5
|
0.5
|
1.0
|
CG
|
1:ASN187
|
3.9
|
0.8
|
1.0
|
C3D
|
1:CLA505
|
4.1
|
0.9
|
1.0
|
C3B
|
1:CLA505
|
4.3
|
0.8
|
1.0
|
ND2
|
1:ASN187
|
4.3
|
1.0
|
1.0
|
C2B
|
1:CLA505
|
4.3
|
0.6
|
1.0
|
C2D
|
1:CLA505
|
4.3
|
0.7
|
1.0
|
C2C
|
1:CLA505
|
4.3
|
0.4
|
1.0
|
C3C
|
1:CLA505
|
4.4
|
0.4
|
1.0
|
C3A
|
1:CLA505
|
4.5
|
0.2
|
1.0
|
C2A
|
1:CLA505
|
4.5
|
0.9
|
1.0
|
CBB
|
1:CLA504
|
4.7
|
0.9
|
1.0
|
CBD
|
1:CLA505
|
4.9
|
0.0
|
1.0
|
CMD
|
1:CLA510
|
5.0
|
0.9
|
1.0
|
|
Magnesium binding site 3 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 3 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg506
b:97.6
occ:1.00
|
MG
|
1:CLA506
|
0.0
|
97.6
|
1.0
|
ND
|
1:CLA506
|
2.0
|
0.9
|
1.0
|
NB
|
1:CLA506
|
2.0
|
0.5
|
1.0
|
NC
|
1:CLA506
|
2.1
|
0.1
|
1.0
|
NA
|
1:CLA506
|
2.2
|
0.2
|
1.0
|
C4D
|
1:CLA506
|
2.9
|
1.0
|
1.0
|
C4B
|
1:CLA506
|
3.0
|
0.9
|
1.0
|
NE2
|
1:GLN201
|
3.0
|
0.6
|
1.0
|
C1C
|
1:CLA506
|
3.0
|
0.8
|
1.0
|
C1B
|
1:CLA506
|
3.1
|
0.2
|
1.0
|
C1D
|
1:CLA506
|
3.1
|
0.6
|
1.0
|
C4A
|
1:CLA506
|
3.1
|
0.1
|
1.0
|
C1A
|
1:CLA506
|
3.2
|
0.5
|
1.0
|
C4C
|
1:CLA506
|
3.2
|
0.5
|
1.0
|
CHC
|
1:CLA506
|
3.3
|
0.6
|
1.0
|
CHB
|
1:CLA506
|
3.4
|
0.1
|
1.0
|
CHA
|
1:CLA506
|
3.5
|
0.4
|
1.0
|
CHD
|
1:CLA506
|
3.6
|
0.9
|
1.0
|
CD
|
1:GLN201
|
3.6
|
0.3
|
1.0
|
C2
|
1:CLA506
|
3.7
|
0.2
|
1.0
|
CG
|
1:GLN201
|
3.9
|
0.9
|
1.0
|
C5
|
1:CLA506
|
4.2
|
0.2
|
1.0
|
C3D
|
1:CLA506
|
4.2
|
0.6
|
1.0
|
O1A
|
1:CLA506
|
4.2
|
0.5
|
1.0
|
C3B
|
1:CLA506
|
4.2
|
0.3
|
1.0
|
C2B
|
1:CLA506
|
4.3
|
0.7
|
1.0
|
C2D
|
1:CLA506
|
4.3
|
0.6
|
1.0
|
OE1
|
1:GLN201
|
4.4
|
1.0
|
1.0
|
C2C
|
1:CLA506
|
4.4
|
0.3
|
1.0
|
C3
|
1:CLA506
|
4.4
|
0.2
|
1.0
|
C3C
|
1:CLA506
|
4.4
|
0.1
|
1.0
|
C3A
|
1:CLA506
|
4.5
|
0.1
|
1.0
|
C2A
|
1:CLA506
|
4.5
|
0.5
|
1.0
|
CGA
|
1:CLA506
|
4.7
|
0.8
|
1.0
|
C1
|
1:CLA506
|
4.7
|
0.3
|
1.0
|
O2A
|
1:CLA506
|
4.7
|
0.4
|
1.0
|
O
|
1:GLY197
|
4.9
|
0.9
|
1.0
|
CBD
|
1:CLA506
|
4.9
|
1.0
|
1.0
|
C7
|
1:CLA506
|
5.0
|
0.8
|
1.0
|
CA
|
1:GLY197
|
5.0
|
0.7
|
1.0
|
|
Magnesium binding site 4 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 4 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg507
b:0.7
occ:1.00
|
MG
|
1:CLA507
|
0.0
|
0.7
|
1.0
|
ND
|
1:CLA507
|
2.0
|
98.5
|
1.0
|
NB
|
1:CLA507
|
2.0
|
0.5
|
1.0
|
NC
|
1:CLA507
|
2.1
|
93.7
|
1.0
|
NA
|
1:CLA507
|
2.2
|
0.5
|
1.0
|
OE2
|
1:GLU80
|
2.9
|
97.8
|
1.0
|
C4D
|
1:CLA507
|
2.9
|
98.0
|
1.0
|
C4B
|
1:CLA507
|
3.0
|
0.3
|
1.0
|
C1C
|
1:CLA507
|
3.0
|
94.8
|
1.0
|
C1B
|
1:CLA507
|
3.1
|
0.6
|
1.0
|
C1D
|
1:CLA507
|
3.1
|
0.2
|
1.0
|
C4A
|
1:CLA507
|
3.1
|
0.8
|
1.0
|
C1A
|
1:CLA507
|
3.2
|
0.1
|
1.0
|
C4C
|
1:CLA507
|
3.2
|
0.8
|
1.0
|
CHC
|
1:CLA507
|
3.3
|
0.3
|
1.0
|
CD
|
1:GLU80
|
3.4
|
98.9
|
1.0
|
CHB
|
1:CLA507
|
3.4
|
97.6
|
1.0
|
CHA
|
1:CLA507
|
3.5
|
0.9
|
1.0
|
CHD
|
1:CLA507
|
3.5
|
0.6
|
1.0
|
C18
|
1:LUT502
|
3.6
|
90.5
|
1.0
|
OE1
|
1:GLU80
|
4.0
|
0.6
|
1.0
|
CG
|
1:GLU80
|
4.0
|
92.3
|
1.0
|
C3D
|
1:CLA507
|
4.2
|
0.0
|
1.0
|
C3B
|
1:CLA507
|
4.2
|
1.0
|
1.0
|
NE
|
1:ARG189
|
4.3
|
0.3
|
1.0
|
C2B
|
1:CLA507
|
4.3
|
0.6
|
1.0
|
C2D
|
1:CLA507
|
4.3
|
0.7
|
1.0
|
C2C
|
1:CLA507
|
4.3
|
0.1
|
1.0
|
NH2
|
1:ARG189
|
4.4
|
0.1
|
1.0
|
C3C
|
1:CLA507
|
4.4
|
0.3
|
1.0
|
C3A
|
1:CLA507
|
4.5
|
0.3
|
1.0
|
C2A
|
1:CLA507
|
4.5
|
0.5
|
1.0
|
CZ
|
1:ARG189
|
4.6
|
0.3
|
1.0
|
CB
|
1:GLU80
|
5.0
|
92.4
|
1.0
|
CBD
|
1:CLA507
|
5.0
|
0.7
|
1.0
|
|
Magnesium binding site 5 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 5 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg508
b:0.8
occ:1.00
|
MG
|
1:CLA508
|
0.0
|
0.8
|
1.0
|
ND
|
1:CLA508
|
2.0
|
0.2
|
1.0
|
NB
|
1:CLA508
|
2.0
|
0.1
|
1.0
|
NC
|
1:CLA508
|
2.1
|
0.7
|
1.0
|
NA
|
1:CLA508
|
2.2
|
0.6
|
1.0
|
NE2
|
1:HIS83
|
2.9
|
94.6
|
1.0
|
C4D
|
1:CLA508
|
2.9
|
0.1
|
1.0
|
C4B
|
1:CLA508
|
3.0
|
0.1
|
1.0
|
C1C
|
1:CLA508
|
3.0
|
0.1
|
1.0
|
C1B
|
1:CLA508
|
3.0
|
0.8
|
1.0
|
C1D
|
1:CLA508
|
3.1
|
0.5
|
1.0
|
C4A
|
1:CLA508
|
3.1
|
0.9
|
1.0
|
C1A
|
1:CLA508
|
3.2
|
0.8
|
1.0
|
C4C
|
1:CLA508
|
3.2
|
0.6
|
1.0
|
CHC
|
1:CLA508
|
3.3
|
0.1
|
1.0
|
CHB
|
1:CLA508
|
3.4
|
0.4
|
1.0
|
CHA
|
1:CLA508
|
3.5
|
0.2
|
1.0
|
CHD
|
1:CLA508
|
3.5
|
0.1
|
1.0
|
CD2
|
1:HIS83
|
3.8
|
96.0
|
1.0
|
CE1
|
1:HIS83
|
3.8
|
98.0
|
1.0
|
C9
|
1:CHL514
|
3.8
|
0.4
|
1.0
|
C3D
|
1:CLA508
|
4.1
|
0.3
|
1.0
|
C3B
|
1:CLA508
|
4.2
|
0.6
|
1.0
|
C11
|
1:CHL514
|
4.2
|
0.7
|
1.0
|
C2B
|
1:CLA508
|
4.3
|
0.8
|
1.0
|
C2D
|
1:CLA508
|
4.3
|
0.7
|
1.0
|
C2C
|
1:CLA508
|
4.3
|
0.3
|
1.0
|
C3C
|
1:CLA508
|
4.4
|
0.6
|
1.0
|
C3A
|
1:CLA508
|
4.5
|
0.0
|
1.0
|
C2A
|
1:CLA508
|
4.5
|
0.1
|
1.0
|
CBD
|
1:CLA508
|
4.9
|
0.6
|
1.0
|
C13
|
1:CHL514
|
4.9
|
0.6
|
1.0
|
ND1
|
1:HIS83
|
4.9
|
99.8
|
1.0
|
CG
|
1:HIS83
|
5.0
|
98.4
|
1.0
|
|
Magnesium binding site 6 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 6 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg509
b:0.2
occ:1.00
|
MG
|
1:CLA509
|
0.0
|
0.2
|
1.0
|
ND
|
1:CLA509
|
2.0
|
0.3
|
1.0
|
NB
|
1:CLA509
|
2.0
|
0.4
|
1.0
|
NC
|
1:CLA509
|
2.1
|
0.2
|
1.0
|
NA
|
1:CLA509
|
2.2
|
0.5
|
1.0
|
C4D
|
1:CLA509
|
2.9
|
0.9
|
1.0
|
C4B
|
1:CLA509
|
3.0
|
0.0
|
1.0
|
C1C
|
1:CLA509
|
3.0
|
0.5
|
1.0
|
C1B
|
1:CLA509
|
3.1
|
0.5
|
1.0
|
C1D
|
1:CLA509
|
3.1
|
0.9
|
1.0
|
C4A
|
1:CLA509
|
3.1
|
0.2
|
1.0
|
C1A
|
1:CLA509
|
3.2
|
0.4
|
1.0
|
C4C
|
1:CLA509
|
3.2
|
0.6
|
1.0
|
CHC
|
1:CLA509
|
3.3
|
0.8
|
1.0
|
CHB
|
1:CLA509
|
3.4
|
0.7
|
1.0
|
C27
|
1:BCR503
|
3.4
|
0.6
|
1.0
|
CHA
|
1:CLA509
|
3.5
|
0.3
|
1.0
|
CHD
|
1:CLA509
|
3.6
|
0.4
|
1.0
|
C28
|
1:BCR503
|
3.6
|
0.2
|
1.0
|
C3D
|
1:CLA509
|
4.2
|
0.7
|
1.0
|
O
|
1:GLY93
|
4.2
|
0.7
|
1.0
|
C3B
|
1:CLA509
|
4.2
|
0.8
|
1.0
|
CA
|
1:GLY93
|
4.3
|
0.4
|
1.0
|
C2B
|
1:CLA509
|
4.3
|
0.6
|
1.0
|
C2D
|
1:CLA509
|
4.3
|
0.8
|
1.0
|
C2C
|
1:CLA509
|
4.4
|
0.5
|
1.0
|
C3C
|
1:CLA509
|
4.4
|
0.5
|
1.0
|
C3A
|
1:CLA509
|
4.5
|
0.4
|
1.0
|
C2A
|
1:CLA509
|
4.5
|
0.4
|
1.0
|
C26
|
1:BCR503
|
4.7
|
0.5
|
1.0
|
C
|
1:GLY93
|
4.7
|
0.7
|
1.0
|
CBD
|
1:CLA509
|
4.9
|
0.9
|
1.0
|
|
Magnesium binding site 7 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 7 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg510
b:0.8
occ:1.00
|
MG
|
1:CLA510
|
0.0
|
0.8
|
1.0
|
ND
|
1:CLA510
|
2.0
|
0.6
|
1.0
|
NB
|
1:CLA510
|
2.0
|
0.6
|
1.0
|
NC
|
1:CLA510
|
2.1
|
0.8
|
1.0
|
NA
|
1:CLA510
|
2.2
|
0.3
|
1.0
|
C4D
|
1:CLA510
|
2.9
|
0.8
|
1.0
|
C4B
|
1:CLA510
|
3.0
|
0.6
|
1.0
|
C1C
|
1:CLA510
|
3.0
|
0.2
|
1.0
|
C1B
|
1:CLA510
|
3.0
|
0.3
|
1.0
|
O4
|
1:LHG517
|
3.1
|
0.6
|
1.0
|
C1D
|
1:CLA510
|
3.1
|
0.3
|
1.0
|
C4A
|
1:CLA510
|
3.2
|
0.4
|
1.0
|
C1A
|
1:CLA510
|
3.2
|
0.4
|
1.0
|
C4C
|
1:CLA510
|
3.2
|
0.6
|
1.0
|
CHC
|
1:CLA510
|
3.3
|
0.3
|
1.0
|
NZ
|
1:LYS186
|
3.3
|
0.8
|
1.0
|
CHB
|
1:CLA510
|
3.4
|
1.0
|
1.0
|
CHA
|
1:CLA510
|
3.4
|
1.0
|
1.0
|
CHD
|
1:CLA510
|
3.5
|
0.0
|
1.0
|
CMD
|
1:CLA505
|
3.9
|
0.4
|
1.0
|
C4
|
1:LHG517
|
4.0
|
0.8
|
1.0
|
CE
|
1:LYS186
|
4.0
|
0.4
|
1.0
|
C3D
|
1:CLA510
|
4.1
|
0.9
|
1.0
|
C3B
|
1:CLA510
|
4.2
|
0.9
|
1.0
|
C2B
|
1:CLA510
|
4.2
|
0.1
|
1.0
|
P
|
1:LHG517
|
4.3
|
0.1
|
1.0
|
C2D
|
1:CLA510
|
4.3
|
0.7
|
1.0
|
C2C
|
1:CLA510
|
4.3
|
0.8
|
1.0
|
C3C
|
1:CLA510
|
4.4
|
0.2
|
1.0
|
O6
|
1:LHG517
|
4.4
|
0.1
|
1.0
|
C2A
|
1:CLA510
|
4.5
|
0.7
|
1.0
|
C3A
|
1:CLA510
|
4.5
|
0.5
|
1.0
|
CBD
|
1:CLA510
|
4.9
|
0.6
|
1.0
|
|
Magnesium binding site 8 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 8 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg511
b:0.4
occ:1.00
|
MG
|
1:CLA511
|
0.0
|
0.4
|
1.0
|
ND
|
1:CLA511
|
2.0
|
0.4
|
1.0
|
NB
|
1:CLA511
|
2.0
|
0.6
|
1.0
|
NC
|
1:CLA511
|
2.1
|
1.0
|
1.0
|
NA
|
1:CLA511
|
2.2
|
0.9
|
1.0
|
NE2
|
1:HIS217
|
2.9
|
0.8
|
1.0
|
C4D
|
1:CLA511
|
2.9
|
0.8
|
1.0
|
C4B
|
1:CLA511
|
3.0
|
0.1
|
1.0
|
C1C
|
1:CLA511
|
3.0
|
0.2
|
1.0
|
C1B
|
1:CLA511
|
3.1
|
0.5
|
1.0
|
C1D
|
1:CLA511
|
3.1
|
0.9
|
1.0
|
C4A
|
1:CLA511
|
3.1
|
0.2
|
1.0
|
C1A
|
1:CLA511
|
3.2
|
0.3
|
1.0
|
C4C
|
1:CLA511
|
3.2
|
0.3
|
1.0
|
CHC
|
1:CLA511
|
3.3
|
0.1
|
1.0
|
CHB
|
1:CLA511
|
3.4
|
0.5
|
1.0
|
CHA
|
1:CLA511
|
3.5
|
0.7
|
1.0
|
CHD
|
1:CLA511
|
3.5
|
0.0
|
1.0
|
CE1
|
1:HIS217
|
3.8
|
0.1
|
1.0
|
CD2
|
1:HIS217
|
3.8
|
0.4
|
1.0
|
C3D
|
1:CLA511
|
4.2
|
0.5
|
1.0
|
C3B
|
1:CLA511
|
4.2
|
0.5
|
1.0
|
C2B
|
1:CLA511
|
4.3
|
0.5
|
1.0
|
C2D
|
1:CLA511
|
4.3
|
0.2
|
1.0
|
C2C
|
1:CLA511
|
4.3
|
0.8
|
1.0
|
C3C
|
1:CLA511
|
4.4
|
0.6
|
1.0
|
C3A
|
1:CLA511
|
4.5
|
0.1
|
1.0
|
C2A
|
1:CLA511
|
4.5
|
0.1
|
1.0
|
CBD
|
1:CLA511
|
4.9
|
0.1
|
1.0
|
ND1
|
1:HIS217
|
4.9
|
0.7
|
1.0
|
CG
|
1:HIS217
|
5.0
|
0.5
|
1.0
|
|
Magnesium binding site 9 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 9 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg512
b:0.6
occ:1.00
|
MG
|
1:CHL512
|
0.0
|
0.6
|
1.0
|
ND
|
1:CHL512
|
2.0
|
0.9
|
1.0
|
NB
|
1:CHL512
|
2.0
|
0.7
|
1.0
|
NA
|
1:CHL512
|
2.1
|
0.5
|
1.0
|
NC
|
1:CHL512
|
2.1
|
0.6
|
1.0
|
C4D
|
1:CHL512
|
2.9
|
0.3
|
1.0
|
C1C
|
1:CHL512
|
2.9
|
0.6
|
1.0
|
C4B
|
1:CHL512
|
2.9
|
1.0
|
1.0
|
C1A
|
1:CHL512
|
3.0
|
0.8
|
1.0
|
C4A
|
1:CHL512
|
3.1
|
0.1
|
1.0
|
C1B
|
1:CHL512
|
3.1
|
0.5
|
1.0
|
CHC
|
1:CHL512
|
3.1
|
0.1
|
1.0
|
NE2
|
1:GLN109
|
3.2
|
0.5
|
1.0
|
C4C
|
1:CHL512
|
3.2
|
0.7
|
1.0
|
C1D
|
1:CHL512
|
3.2
|
0.7
|
1.0
|
OE1
|
1:GLN109
|
3.2
|
0.1
|
1.0
|
CHA
|
1:CHL512
|
3.3
|
0.7
|
1.0
|
CD
|
1:GLN109
|
3.4
|
0.4
|
1.0
|
CHB
|
1:CHL512
|
3.5
|
0.7
|
1.0
|
CHD
|
1:CHL512
|
3.6
|
0.7
|
1.0
|
C39
|
G:LMG206
|
3.9
|
0.6
|
1.0
|
C3D
|
1:CHL512
|
4.2
|
0.4
|
1.0
|
C2C
|
1:CHL512
|
4.2
|
0.1
|
1.0
|
C3B
|
1:CHL512
|
4.2
|
0.8
|
1.0
|
C37
|
G:LMG206
|
4.3
|
0.0
|
1.0
|
C2B
|
1:CHL512
|
4.3
|
0.5
|
1.0
|
C3C
|
1:CHL512
|
4.3
|
0.1
|
1.0
|
C2D
|
1:CHL512
|
4.3
|
0.0
|
1.0
|
C2A
|
1:CHL512
|
4.4
|
0.6
|
1.0
|
C3A
|
1:CHL512
|
4.4
|
0.2
|
1.0
|
CG
|
1:GLN109
|
4.5
|
0.9
|
1.0
|
CB
|
1:GLN109
|
4.7
|
0.3
|
1.0
|
C38
|
G:LMG206
|
4.7
|
0.5
|
1.0
|
CMC
|
1:CLA515
|
4.7
|
0.7
|
1.0
|
C40
|
G:LMG206
|
4.7
|
0.9
|
1.0
|
C41
|
G:LMG206
|
4.8
|
1.0
|
1.0
|
CBD
|
1:CHL512
|
4.8
|
0.8
|
1.0
|
|
Magnesium binding site 10 out
of 156 in 5l8r
Go back to
Magnesium Binding Sites List in 5l8r
Magnesium binding site 10 out
of 156 in the The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of The Structure of Plant Photosystem I Super-Complex at 2.6 Angstrom Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg513
b:0.8
occ:1.00
|
MG
|
1:CLA513
|
0.0
|
0.8
|
1.0
|
ND
|
1:CLA513
|
2.0
|
0.8
|
1.0
|
NB
|
1:CLA513
|
2.0
|
0.9
|
1.0
|
NC
|
1:CLA513
|
2.1
|
0.9
|
1.0
|
NA
|
1:CLA513
|
2.2
|
0.5
|
1.0
|
C4D
|
1:CLA513
|
2.9
|
0.5
|
1.0
|
C4B
|
1:CLA513
|
3.0
|
0.8
|
1.0
|
C1C
|
1:CLA513
|
3.0
|
0.4
|
1.0
|
C1B
|
1:CLA513
|
3.1
|
0.5
|
1.0
|
C1D
|
1:CLA513
|
3.1
|
0.9
|
1.0
|
C4A
|
1:CLA513
|
3.1
|
0.1
|
1.0
|
C1A
|
1:CLA513
|
3.2
|
0.6
|
1.0
|
C4C
|
1:CLA513
|
3.2
|
0.3
|
1.0
|
CHC
|
1:CLA513
|
3.3
|
0.7
|
1.0
|
CHB
|
1:CLA513
|
3.4
|
0.1
|
1.0
|
CHA
|
1:CLA513
|
3.5
|
0.5
|
1.0
|
CZ
|
1:PHE165
|
3.5
|
0.4
|
1.0
|
CHD
|
1:CLA513
|
3.5
|
0.2
|
1.0
|
CG1
|
1:VAL145
|
3.6
|
0.8
|
1.0
|
CE1
|
1:PHE165
|
3.9
|
0.5
|
1.0
|
C3D
|
1:CLA513
|
4.2
|
0.5
|
1.0
|
C3B
|
1:CLA513
|
4.2
|
0.9
|
1.0
|
C2B
|
1:CLA513
|
4.3
|
0.2
|
1.0
|
C2D
|
1:CLA513
|
4.3
|
0.8
|
1.0
|
C2C
|
1:CLA513
|
4.3
|
0.4
|
1.0
|
C3C
|
1:CLA513
|
4.4
|
0.6
|
1.0
|
C3A
|
1:CLA513
|
4.5
|
0.5
|
1.0
|
CE2
|
1:PHE165
|
4.5
|
1.0
|
1.0
|
C2A
|
1:CLA513
|
4.5
|
0.6
|
1.0
|
CBD
|
1:CLA513
|
4.9
|
0.1
|
1.0
|
|
Reference:
Y.Mazor,
A.Borovikova,
I.Caspy,
N.Nelson.
Structure of the Plant Photosystem I Supercomplex at 2.6 Angstrom Resolution. Nat Plants V. 3 17014 2017.
ISSN: ESSN 2055-0278
PubMed: 28248295
DOI: 10.1038/NPLANTS.2017.14
Page generated: Sun Sep 29 19:45:27 2024
|