Magnesium in PDB 5lcb: In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Magnesium atom in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
(pdb code 5lcb). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the
In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy, PDB code: 5lcb:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 1 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:0.0
occ:1.00
|
MG
|
A:BCL101
|
0.0
|
0.0
|
1.0
|
NB
|
A:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
A:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
A:BCL101
|
2.0
|
0.0
|
1.0
|
ND
|
A:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS25
|
2.2
|
0.0
|
1.0
|
HB2
|
J:ALA14
|
2.9
|
0.0
|
1.0
|
C4B
|
A:BCL101
|
3.0
|
0.0
|
1.0
|
C4D
|
A:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
A:BCL101
|
3.0
|
0.0
|
1.0
|
C1C
|
A:BCL101
|
3.0
|
0.0
|
1.0
|
C1A
|
A:BCL101
|
3.1
|
0.0
|
1.0
|
C4A
|
A:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
A:BCL101
|
3.1
|
0.0
|
1.0
|
C1D
|
A:BCL101
|
3.1
|
0.0
|
1.0
|
CD2
|
A:HIS25
|
3.1
|
0.0
|
1.0
|
CE1
|
A:HIS25
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS25
|
3.3
|
0.0
|
1.0
|
CHC
|
A:BCL101
|
3.4
|
0.0
|
1.0
|
CHB
|
A:BCL101
|
3.4
|
0.0
|
1.0
|
CHD
|
A:BCL101
|
3.4
|
0.0
|
1.0
|
CHA
|
A:BCL101
|
3.5
|
0.0
|
1.0
|
HE1
|
A:HIS25
|
3.5
|
0.0
|
1.0
|
HB3
|
J:ALA14
|
3.8
|
0.0
|
1.0
|
CB
|
J:ALA14
|
3.8
|
0.0
|
1.0
|
C2B
|
A:BCL101
|
4.1
|
0.0
|
1.0
|
C3B
|
A:BCL101
|
4.2
|
0.0
|
1.0
|
CG
|
A:HIS25
|
4.2
|
0.0
|
1.0
|
C2C
|
A:BCL101
|
4.3
|
0.0
|
1.0
|
C3D
|
A:BCL101
|
4.3
|
0.0
|
1.0
|
ND1
|
A:HIS25
|
4.3
|
0.0
|
1.0
|
C2D
|
A:BCL101
|
4.3
|
0.0
|
1.0
|
HHC
|
A:BCL101
|
4.4
|
0.0
|
1.0
|
C2A
|
A:BCL101
|
4.4
|
0.0
|
1.0
|
C3A
|
A:BCL101
|
4.4
|
0.0
|
1.0
|
C3C
|
A:BCL101
|
4.4
|
0.0
|
1.0
|
HHD
|
A:BCL101
|
4.5
|
0.0
|
1.0
|
H2C
|
A:BCL101
|
4.5
|
0.0
|
1.0
|
HHB
|
A:BCL101
|
4.5
|
0.0
|
1.0
|
HB1
|
J:ALA14
|
4.5
|
0.0
|
1.0
|
C
|
J:ALA14
|
4.5
|
0.0
|
1.0
|
O
|
J:ALA14
|
4.5
|
0.0
|
1.0
|
HA2
|
J:GLY15
|
4.7
|
0.0
|
1.0
|
HMA2
|
A:BCL101
|
4.7
|
0.0
|
1.0
|
HB2
|
J:PHE18
|
4.7
|
0.0
|
1.0
|
CA
|
J:ALA14
|
4.7
|
0.0
|
1.0
|
N
|
J:GLY15
|
4.9
|
0.0
|
1.0
|
CBD
|
A:BCL101
|
4.9
|
0.0
|
1.0
|
H3C
|
A:BCL101
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 2 out
of 14 in 5lcb
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Magnesium Binding Sites List in 5lcb
Magnesium binding site 2 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg101
b:0.0
occ:1.00
|
MG
|
B:BCL101
|
0.0
|
0.0
|
1.0
|
NB
|
B:BCL101
|
2.0
|
0.0
|
1.0
|
ND
|
B:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
B:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
B:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
B:HIS25
|
2.2
|
0.0
|
1.0
|
C4D
|
B:BCL101
|
3.0
|
0.0
|
1.0
|
C4B
|
B:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
B:BCL101
|
3.0
|
0.0
|
1.0
|
C1C
|
B:BCL101
|
3.0
|
0.0
|
1.0
|
C4C
|
B:BCL101
|
3.1
|
0.0
|
1.0
|
C1A
|
B:BCL101
|
3.1
|
0.0
|
1.0
|
C1D
|
B:BCL101
|
3.1
|
0.0
|
1.0
|
C4A
|
B:BCL101
|
3.1
|
0.0
|
1.0
|
CD2
|
B:HIS25
|
3.1
|
0.0
|
1.0
|
HB2
|
M:ALA14
|
3.1
|
0.0
|
1.0
|
CE1
|
B:HIS25
|
3.2
|
0.0
|
1.0
|
HD2
|
B:HIS25
|
3.2
|
0.0
|
1.0
|
CHC
|
B:BCL101
|
3.4
|
0.0
|
1.0
|
CHB
|
B:BCL101
|
3.4
|
0.0
|
1.0
|
CHD
|
B:BCL101
|
3.4
|
0.0
|
1.0
|
CHA
|
B:BCL101
|
3.4
|
0.0
|
1.0
|
HE1
|
B:HIS25
|
3.5
|
0.0
|
1.0
|
C2B
|
B:BCL101
|
4.1
|
0.0
|
1.0
|
CB
|
M:ALA14
|
4.1
|
0.0
|
1.0
|
C3B
|
B:BCL101
|
4.2
|
0.0
|
1.0
|
CG
|
B:HIS25
|
4.3
|
0.0
|
1.0
|
C3D
|
B:BCL101
|
4.3
|
0.0
|
1.0
|
C2C
|
B:BCL101
|
4.3
|
0.0
|
1.0
|
C2D
|
B:BCL101
|
4.3
|
0.0
|
1.0
|
ND1
|
B:HIS25
|
4.3
|
0.0
|
1.0
|
HHC
|
B:BCL101
|
4.4
|
0.0
|
1.0
|
C3C
|
B:BCL101
|
4.4
|
0.0
|
1.0
|
HB3
|
M:ALA14
|
4.4
|
0.0
|
1.0
|
HHD
|
B:BCL101
|
4.4
|
0.0
|
1.0
|
C3A
|
B:BCL101
|
4.4
|
0.0
|
1.0
|
C2A
|
B:BCL101
|
4.4
|
0.0
|
1.0
|
HHB
|
B:BCL101
|
4.5
|
0.0
|
1.0
|
H2C
|
B:BCL101
|
4.5
|
0.0
|
1.0
|
C
|
M:ALA14
|
4.7
|
0.0
|
1.0
|
HMA2
|
B:BCL101
|
4.7
|
0.0
|
1.0
|
HA2
|
M:GLY15
|
4.8
|
0.0
|
1.0
|
HB1
|
M:ALA14
|
4.8
|
0.0
|
1.0
|
N
|
M:GLY15
|
4.8
|
0.0
|
1.0
|
CBD
|
B:BCL101
|
4.9
|
0.0
|
1.0
|
CA
|
M:ALA14
|
4.9
|
0.0
|
1.0
|
O
|
M:ALA14
|
4.9
|
0.0
|
1.0
|
HA
|
M:ALA14
|
4.9
|
0.0
|
1.0
|
HB2
|
M:PHE18
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 3 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 3 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg101
b:0.0
occ:1.00
|
MG
|
C:BCL101
|
0.0
|
0.0
|
1.0
|
ND
|
C:BCL101
|
2.0
|
0.0
|
1.0
|
NB
|
C:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
C:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
C:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
C:HIS25
|
2.3
|
0.0
|
1.0
|
C4D
|
C:BCL101
|
3.0
|
0.0
|
1.0
|
C1A
|
C:BCL101
|
3.0
|
0.0
|
1.0
|
C4B
|
C:BCL101
|
3.0
|
0.0
|
1.0
|
C1D
|
C:BCL101
|
3.0
|
0.0
|
1.0
|
C1C
|
C:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
C:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
C:BCL101
|
3.1
|
0.0
|
1.0
|
C4A
|
C:BCL101
|
3.1
|
0.0
|
1.0
|
CE1
|
C:HIS25
|
3.2
|
0.0
|
1.0
|
CD2
|
C:HIS25
|
3.3
|
0.0
|
1.0
|
HE1
|
C:HIS25
|
3.4
|
0.0
|
1.0
|
CHC
|
C:BCL101
|
3.4
|
0.0
|
1.0
|
CHD
|
C:BCL101
|
3.4
|
0.0
|
1.0
|
CHA
|
C:BCL101
|
3.4
|
0.0
|
1.0
|
CHB
|
C:BCL101
|
3.4
|
0.0
|
1.0
|
HD2
|
C:HIS25
|
3.6
|
0.0
|
1.0
|
C2B
|
C:BCL101
|
4.2
|
0.0
|
1.0
|
C3D
|
C:BCL101
|
4.2
|
0.0
|
1.0
|
C3B
|
C:BCL101
|
4.2
|
0.0
|
1.0
|
C2D
|
C:BCL101
|
4.3
|
0.0
|
1.0
|
C2C
|
C:BCL101
|
4.3
|
0.0
|
1.0
|
C3C
|
C:BCL101
|
4.4
|
0.0
|
1.0
|
ND1
|
C:HIS25
|
4.4
|
0.0
|
1.0
|
C2A
|
C:BCL101
|
4.4
|
0.0
|
1.0
|
HHC
|
C:BCL101
|
4.4
|
0.0
|
1.0
|
C3A
|
C:BCL101
|
4.4
|
0.0
|
1.0
|
HHD
|
C:BCL101
|
4.4
|
0.0
|
1.0
|
CG
|
C:HIS25
|
4.5
|
0.0
|
1.0
|
HHB
|
C:BCL101
|
4.5
|
0.0
|
1.0
|
H2C
|
C:BCL101
|
4.6
|
0.0
|
1.0
|
HMA2
|
C:BCL101
|
4.7
|
0.0
|
1.0
|
CBD
|
C:BCL101
|
4.9
|
0.0
|
1.0
|
HD13
|
N:LEU36
|
4.9
|
0.0
|
1.0
|
|
Magnesium binding site 4 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 4 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg101
b:0.0
occ:1.00
|
MG
|
D:BCL101
|
0.0
|
0.0
|
1.0
|
NB
|
D:BCL101
|
2.0
|
0.0
|
1.0
|
ND
|
D:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
D:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
D:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
D:HIS25
|
2.2
|
0.0
|
1.0
|
C4D
|
D:BCL101
|
3.0
|
0.0
|
1.0
|
C4B
|
D:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
D:BCL101
|
3.0
|
0.0
|
1.0
|
C1A
|
D:BCL101
|
3.0
|
0.0
|
1.0
|
C1D
|
D:BCL101
|
3.1
|
0.0
|
1.0
|
C1C
|
D:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
D:BCL101
|
3.1
|
0.0
|
1.0
|
C4A
|
D:BCL101
|
3.1
|
0.0
|
1.0
|
CE1
|
D:HIS25
|
3.2
|
0.0
|
1.0
|
CD2
|
D:HIS25
|
3.3
|
0.0
|
1.0
|
CHC
|
D:BCL101
|
3.4
|
0.0
|
1.0
|
HE1
|
D:HIS25
|
3.4
|
0.0
|
1.0
|
CHD
|
D:BCL101
|
3.4
|
0.0
|
1.0
|
CHB
|
D:BCL101
|
3.4
|
0.0
|
1.0
|
CHA
|
D:BCL101
|
3.4
|
0.0
|
1.0
|
HD2
|
D:HIS25
|
3.5
|
0.0
|
1.0
|
C2B
|
D:BCL101
|
4.2
|
0.0
|
1.0
|
C3B
|
D:BCL101
|
4.2
|
0.0
|
1.0
|
C3D
|
D:BCL101
|
4.3
|
0.0
|
1.0
|
C2D
|
D:BCL101
|
4.3
|
0.0
|
1.0
|
C2C
|
D:BCL101
|
4.3
|
0.0
|
1.0
|
HD13
|
I:LEU36
|
4.4
|
0.0
|
1.0
|
ND1
|
D:HIS25
|
4.4
|
0.0
|
1.0
|
C3A
|
D:BCL101
|
4.4
|
0.0
|
1.0
|
C3C
|
D:BCL101
|
4.4
|
0.0
|
1.0
|
C2A
|
D:BCL101
|
4.4
|
0.0
|
1.0
|
HHC
|
D:BCL101
|
4.4
|
0.0
|
1.0
|
HHD
|
D:BCL101
|
4.4
|
0.0
|
1.0
|
CG
|
D:HIS25
|
4.4
|
0.0
|
1.0
|
HHB
|
D:BCL101
|
4.5
|
0.0
|
1.0
|
H2C
|
D:BCL101
|
4.6
|
0.0
|
1.0
|
HMA2
|
D:BCL101
|
4.7
|
0.0
|
1.0
|
HD11
|
I:LEU36
|
4.8
|
0.0
|
1.0
|
CBD
|
D:BCL101
|
4.9
|
0.0
|
1.0
|
H3C
|
D:BCL101
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 5 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 5 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg101
b:0.0
occ:1.00
|
MG
|
E:BCL101
|
0.0
|
0.0
|
1.0
|
NB
|
E:BCL101
|
2.0
|
0.0
|
1.0
|
ND
|
E:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
E:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
E:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
E:HIS25
|
2.2
|
0.0
|
1.0
|
C4D
|
E:BCL101
|
3.0
|
0.0
|
1.0
|
C4B
|
E:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
E:BCL101
|
3.0
|
0.0
|
1.0
|
C1A
|
E:BCL101
|
3.1
|
0.0
|
1.0
|
C1C
|
E:BCL101
|
3.1
|
0.0
|
1.0
|
C1D
|
E:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
E:BCL101
|
3.1
|
0.0
|
1.0
|
C4A
|
E:BCL101
|
3.1
|
0.0
|
1.0
|
CE1
|
E:HIS25
|
3.2
|
0.0
|
1.0
|
CD2
|
E:HIS25
|
3.2
|
0.0
|
1.0
|
CHC
|
E:BCL101
|
3.4
|
0.0
|
1.0
|
HE1
|
E:HIS25
|
3.4
|
0.0
|
1.0
|
CHD
|
E:BCL101
|
3.4
|
0.0
|
1.0
|
CHB
|
E:BCL101
|
3.4
|
0.0
|
1.0
|
CHA
|
E:BCL101
|
3.4
|
0.0
|
1.0
|
HD2
|
E:HIS25
|
3.4
|
0.0
|
1.0
|
C2B
|
E:BCL101
|
4.2
|
0.0
|
1.0
|
C3B
|
E:BCL101
|
4.2
|
0.0
|
1.0
|
C3D
|
E:BCL101
|
4.3
|
0.0
|
1.0
|
C2D
|
E:BCL101
|
4.3
|
0.0
|
1.0
|
C2C
|
E:BCL101
|
4.3
|
0.0
|
1.0
|
ND1
|
E:HIS25
|
4.4
|
0.0
|
1.0
|
CG
|
E:HIS25
|
4.4
|
0.0
|
1.0
|
C3A
|
E:BCL101
|
4.4
|
0.0
|
1.0
|
C3C
|
E:BCL101
|
4.4
|
0.0
|
1.0
|
C2A
|
E:BCL101
|
4.4
|
0.0
|
1.0
|
HHC
|
E:BCL101
|
4.4
|
0.0
|
1.0
|
HHD
|
E:BCL101
|
4.4
|
0.0
|
1.0
|
HHB
|
E:BCL101
|
4.5
|
0.0
|
1.0
|
H2C
|
E:BCL101
|
4.6
|
0.0
|
1.0
|
HD13
|
J:LEU36
|
4.7
|
0.0
|
1.0
|
HMA2
|
E:BCL101
|
4.7
|
0.0
|
1.0
|
CBD
|
E:BCL101
|
4.9
|
0.0
|
1.0
|
H3C
|
E:BCL101
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 6 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 6 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg101
b:0.0
occ:1.00
|
MG
|
F:BCL101
|
0.0
|
0.0
|
1.0
|
NB
|
F:BCL101
|
2.0
|
0.0
|
1.0
|
ND
|
F:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
F:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
F:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
F:HIS25
|
2.2
|
0.0
|
1.0
|
C4D
|
F:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
F:BCL101
|
3.0
|
0.0
|
1.0
|
C4B
|
F:BCL101
|
3.0
|
0.0
|
1.0
|
C1D
|
F:BCL101
|
3.0
|
0.0
|
1.0
|
C1C
|
F:BCL101
|
3.0
|
0.0
|
1.0
|
C4A
|
F:BCL101
|
3.1
|
0.0
|
1.0
|
C1A
|
F:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
F:BCL101
|
3.1
|
0.0
|
1.0
|
HB2
|
I:ALA14
|
3.1
|
0.0
|
1.0
|
CD2
|
F:HIS25
|
3.2
|
0.0
|
1.0
|
CE1
|
F:HIS25
|
3.3
|
0.0
|
1.0
|
CHC
|
F:BCL101
|
3.4
|
0.0
|
1.0
|
HD2
|
F:HIS25
|
3.4
|
0.0
|
1.0
|
CHB
|
F:BCL101
|
3.4
|
0.0
|
1.0
|
CHD
|
F:BCL101
|
3.4
|
0.0
|
1.0
|
CHA
|
F:BCL101
|
3.5
|
0.0
|
1.0
|
HE1
|
F:HIS25
|
3.5
|
0.0
|
1.0
|
CB
|
I:ALA14
|
4.1
|
0.0
|
1.0
|
C2B
|
F:BCL101
|
4.1
|
0.0
|
1.0
|
HB3
|
I:ALA14
|
4.2
|
0.0
|
1.0
|
C3B
|
F:BCL101
|
4.2
|
0.0
|
1.0
|
C3D
|
F:BCL101
|
4.3
|
0.0
|
1.0
|
C2D
|
F:BCL101
|
4.3
|
0.0
|
1.0
|
C2C
|
F:BCL101
|
4.3
|
0.0
|
1.0
|
CG
|
F:HIS25
|
4.4
|
0.0
|
1.0
|
ND1
|
F:HIS25
|
4.4
|
0.0
|
1.0
|
C3A
|
F:BCL101
|
4.4
|
0.0
|
1.0
|
HHC
|
F:BCL101
|
4.4
|
0.0
|
1.0
|
C2A
|
F:BCL101
|
4.4
|
0.0
|
1.0
|
HHD
|
F:BCL101
|
4.4
|
0.0
|
1.0
|
C3C
|
F:BCL101
|
4.5
|
0.0
|
1.0
|
HHB
|
F:BCL101
|
4.5
|
0.0
|
1.0
|
H2C
|
F:BCL101
|
4.6
|
0.0
|
1.0
|
O
|
I:ALA14
|
4.7
|
0.0
|
1.0
|
HB1
|
I:ALA14
|
4.7
|
0.0
|
1.0
|
C
|
I:ALA14
|
4.7
|
0.0
|
1.0
|
HMA2
|
F:BCL101
|
4.8
|
0.0
|
1.0
|
HB2
|
I:PHE18
|
4.9
|
0.0
|
1.0
|
HA2
|
I:GLY15
|
4.9
|
0.0
|
1.0
|
CBD
|
F:BCL101
|
4.9
|
0.0
|
1.0
|
CA
|
I:ALA14
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 7 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 7 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg101
b:0.0
occ:1.00
|
MG
|
G:BCL101
|
0.0
|
0.0
|
1.0
|
ND
|
G:BCL101
|
2.0
|
0.0
|
1.0
|
NB
|
G:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
G:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
G:BCL101
|
2.1
|
0.0
|
1.0
|
NE2
|
G:HIS25
|
2.2
|
0.0
|
1.0
|
HB2
|
N:ALA14
|
2.8
|
0.0
|
1.0
|
C4D
|
G:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
G:BCL101
|
3.0
|
0.0
|
1.0
|
C4B
|
G:BCL101
|
3.0
|
0.0
|
1.0
|
C1D
|
G:BCL101
|
3.0
|
0.0
|
1.0
|
C4A
|
G:BCL101
|
3.1
|
0.0
|
1.0
|
C1A
|
G:BCL101
|
3.1
|
0.0
|
1.0
|
C1C
|
G:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
G:BCL101
|
3.1
|
0.0
|
1.0
|
CD2
|
G:HIS25
|
3.1
|
0.0
|
1.0
|
HD2
|
G:HIS25
|
3.3
|
0.0
|
1.0
|
CE1
|
G:HIS25
|
3.3
|
0.0
|
1.0
|
CHC
|
G:BCL101
|
3.4
|
0.0
|
1.0
|
CHB
|
G:BCL101
|
3.4
|
0.0
|
1.0
|
CHD
|
G:BCL101
|
3.4
|
0.0
|
1.0
|
CHA
|
G:BCL101
|
3.4
|
0.0
|
1.0
|
HE1
|
G:HIS25
|
3.6
|
0.0
|
1.0
|
CB
|
N:ALA14
|
3.9
|
0.0
|
1.0
|
C2B
|
G:BCL101
|
4.1
|
0.0
|
1.0
|
C3B
|
G:BCL101
|
4.2
|
0.0
|
1.0
|
C3D
|
G:BCL101
|
4.2
|
0.0
|
1.0
|
C2D
|
G:BCL101
|
4.3
|
0.0
|
1.0
|
HB3
|
N:ALA14
|
4.3
|
0.0
|
1.0
|
HB1
|
N:ALA14
|
4.3
|
0.0
|
1.0
|
CG
|
G:HIS25
|
4.3
|
0.0
|
1.0
|
C2C
|
G:BCL101
|
4.4
|
0.0
|
1.0
|
C3A
|
G:BCL101
|
4.4
|
0.0
|
1.0
|
ND1
|
G:HIS25
|
4.4
|
0.0
|
1.0
|
C2A
|
G:BCL101
|
4.4
|
0.0
|
1.0
|
HHD
|
G:BCL101
|
4.4
|
0.0
|
1.0
|
HHC
|
G:BCL101
|
4.4
|
0.0
|
1.0
|
C3C
|
G:BCL101
|
4.5
|
0.0
|
1.0
|
HHB
|
G:BCL101
|
4.5
|
0.0
|
1.0
|
O
|
N:ALA14
|
4.5
|
0.0
|
1.0
|
C
|
N:ALA14
|
4.6
|
0.0
|
1.0
|
HB2
|
N:PHE18
|
4.6
|
0.0
|
1.0
|
H2C
|
G:BCL101
|
4.7
|
0.0
|
1.0
|
CA
|
N:ALA14
|
4.7
|
0.0
|
1.0
|
HA
|
N:ALA14
|
4.8
|
0.0
|
1.0
|
HMA2
|
G:BCL101
|
4.8
|
0.0
|
1.0
|
CBD
|
G:BCL101
|
4.9
|
0.0
|
1.0
|
|
Magnesium binding site 8 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 8 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg101
b:0.0
occ:1.00
|
MG
|
H:BCL101
|
0.0
|
0.0
|
1.0
|
NB
|
H:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
H:BCL101
|
2.0
|
0.0
|
1.0
|
ND
|
H:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
H:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
H:HIS25
|
2.2
|
0.0
|
1.0
|
C4D
|
H:BCL101
|
3.0
|
0.0
|
1.0
|
C4B
|
H:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
H:BCL101
|
3.0
|
0.0
|
1.0
|
C1C
|
H:BCL101
|
3.0
|
0.0
|
1.0
|
C1A
|
H:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
H:BCL101
|
3.1
|
0.0
|
1.0
|
C1D
|
H:BCL101
|
3.1
|
0.0
|
1.0
|
C4A
|
H:BCL101
|
3.1
|
0.0
|
1.0
|
CE1
|
H:HIS25
|
3.2
|
0.0
|
1.0
|
CD2
|
H:HIS25
|
3.2
|
0.0
|
1.0
|
CHC
|
H:BCL101
|
3.4
|
0.0
|
1.0
|
CHD
|
H:BCL101
|
3.4
|
0.0
|
1.0
|
HE1
|
H:HIS25
|
3.4
|
0.0
|
1.0
|
CHB
|
H:BCL101
|
3.4
|
0.0
|
1.0
|
HD2
|
H:HIS25
|
3.5
|
0.0
|
1.0
|
CHA
|
H:BCL101
|
3.5
|
0.0
|
1.0
|
C2B
|
H:BCL101
|
4.2
|
0.0
|
1.0
|
C3B
|
H:BCL101
|
4.2
|
0.0
|
1.0
|
C3D
|
H:BCL101
|
4.3
|
0.0
|
1.0
|
C2C
|
H:BCL101
|
4.3
|
0.0
|
1.0
|
C2D
|
H:BCL101
|
4.3
|
0.0
|
1.0
|
ND1
|
H:HIS25
|
4.4
|
0.0
|
1.0
|
CG
|
H:HIS25
|
4.4
|
0.0
|
1.0
|
C3C
|
H:BCL101
|
4.4
|
0.0
|
1.0
|
C3A
|
H:BCL101
|
4.4
|
0.0
|
1.0
|
C2A
|
H:BCL101
|
4.4
|
0.0
|
1.0
|
HHC
|
H:BCL101
|
4.4
|
0.0
|
1.0
|
HHD
|
H:BCL101
|
4.5
|
0.0
|
1.0
|
HHB
|
H:BCL101
|
4.5
|
0.0
|
1.0
|
H2C
|
H:BCL101
|
4.6
|
0.0
|
1.0
|
HMA2
|
H:BCL101
|
4.7
|
0.0
|
1.0
|
CBD
|
H:BCL101
|
4.9
|
0.0
|
1.0
|
H3C
|
H:BCL101
|
4.9
|
0.0
|
1.0
|
HD13
|
M:LEU36
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 9 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 9 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg101
b:0.0
occ:1.00
|
MG
|
I:BCL101
|
0.0
|
0.0
|
1.0
|
NB
|
I:BCL101
|
2.0
|
0.0
|
1.0
|
ND
|
I:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
I:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
I:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
I:HIS25
|
2.2
|
0.0
|
1.0
|
HB2
|
F:ALA14
|
2.6
|
0.0
|
1.0
|
C4D
|
I:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
I:BCL101
|
3.0
|
0.0
|
1.0
|
C4B
|
I:BCL101
|
3.0
|
0.0
|
1.0
|
C1C
|
I:BCL101
|
3.1
|
0.0
|
1.0
|
C4A
|
I:BCL101
|
3.1
|
0.0
|
1.0
|
C1A
|
I:BCL101
|
3.1
|
0.0
|
1.0
|
C1D
|
I:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
I:BCL101
|
3.1
|
0.0
|
1.0
|
CD2
|
I:HIS25
|
3.2
|
0.0
|
1.0
|
CE1
|
I:HIS25
|
3.2
|
0.0
|
1.0
|
HD2
|
I:HIS25
|
3.4
|
0.0
|
1.0
|
CHC
|
I:BCL101
|
3.4
|
0.0
|
1.0
|
CHB
|
I:BCL101
|
3.4
|
0.0
|
1.0
|
CHD
|
I:BCL101
|
3.4
|
0.0
|
1.0
|
HE1
|
I:HIS25
|
3.5
|
0.0
|
1.0
|
CHA
|
I:BCL101
|
3.5
|
0.0
|
1.0
|
CB
|
F:ALA14
|
3.6
|
0.0
|
1.0
|
HB3
|
F:ALA14
|
3.7
|
0.0
|
1.0
|
HB1
|
F:ALA14
|
4.2
|
0.0
|
1.0
|
C2B
|
I:BCL101
|
4.2
|
0.0
|
1.0
|
C3B
|
I:BCL101
|
4.2
|
0.0
|
1.0
|
C3D
|
I:BCL101
|
4.3
|
0.0
|
1.0
|
C2D
|
I:BCL101
|
4.3
|
0.0
|
1.0
|
CG
|
I:HIS25
|
4.3
|
0.0
|
1.0
|
C2C
|
I:BCL101
|
4.3
|
0.0
|
1.0
|
ND1
|
I:HIS25
|
4.3
|
0.0
|
1.0
|
O
|
F:ALA14
|
4.3
|
0.0
|
1.0
|
C3A
|
I:BCL101
|
4.4
|
0.0
|
1.0
|
C2A
|
I:BCL101
|
4.4
|
0.0
|
1.0
|
HHC
|
I:BCL101
|
4.4
|
0.0
|
1.0
|
HHB
|
I:BCL101
|
4.5
|
0.0
|
1.0
|
C
|
F:ALA14
|
4.5
|
0.0
|
1.0
|
C3C
|
I:BCL101
|
4.5
|
0.0
|
1.0
|
HHD
|
I:BCL101
|
4.5
|
0.0
|
1.0
|
CA
|
F:ALA14
|
4.6
|
0.0
|
1.0
|
H2C
|
I:BCL101
|
4.6
|
0.0
|
1.0
|
HMA2
|
I:BCL101
|
4.7
|
0.0
|
1.0
|
HA
|
F:ALA14
|
4.8
|
0.0
|
1.0
|
CBD
|
I:BCL101
|
4.9
|
0.0
|
1.0
|
HB2
|
F:PHE18
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 10 out
of 14 in 5lcb
Go back to
Magnesium Binding Sites List in 5lcb
Magnesium binding site 10 out
of 14 in the In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of In Situ Atomic-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum Obtained Combining Solid-State uc(Nmr) Spectroscopy, Cryo Electron Microscopy and Polarization Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg101
b:0.0
occ:1.00
|
MG
|
J:BCL101
|
0.0
|
0.0
|
1.0
|
NB
|
J:BCL101
|
2.0
|
0.0
|
1.0
|
ND
|
J:BCL101
|
2.0
|
0.0
|
1.0
|
NC
|
J:BCL101
|
2.0
|
0.0
|
1.0
|
NA
|
J:BCL101
|
2.0
|
0.0
|
1.0
|
NE2
|
J:HIS25
|
2.2
|
0.0
|
1.0
|
HB2
|
A:ALA14
|
2.5
|
0.0
|
1.0
|
C4B
|
J:BCL101
|
3.0
|
0.0
|
1.0
|
C1B
|
J:BCL101
|
3.0
|
0.0
|
1.0
|
C4D
|
J:BCL101
|
3.0
|
0.0
|
1.0
|
C1C
|
J:BCL101
|
3.1
|
0.0
|
1.0
|
C1D
|
J:BCL101
|
3.1
|
0.0
|
1.0
|
C4A
|
J:BCL101
|
3.1
|
0.0
|
1.0
|
C1A
|
J:BCL101
|
3.1
|
0.0
|
1.0
|
C4C
|
J:BCL101
|
3.1
|
0.0
|
1.0
|
CD2
|
J:HIS25
|
3.1
|
0.0
|
1.0
|
CE1
|
J:HIS25
|
3.2
|
0.0
|
1.0
|
HD2
|
J:HIS25
|
3.3
|
0.0
|
1.0
|
CHC
|
J:BCL101
|
3.4
|
0.0
|
1.0
|
CHB
|
J:BCL101
|
3.4
|
0.0
|
1.0
|
CHD
|
J:BCL101
|
3.4
|
0.0
|
1.0
|
CHA
|
J:BCL101
|
3.5
|
0.0
|
1.0
|
HE1
|
J:HIS25
|
3.5
|
0.0
|
1.0
|
CB
|
A:ALA14
|
3.5
|
0.0
|
1.0
|
HB3
|
A:ALA14
|
3.8
|
0.0
|
1.0
|
HB1
|
A:ALA14
|
4.0
|
0.0
|
1.0
|
C2B
|
J:BCL101
|
4.1
|
0.0
|
1.0
|
C3B
|
J:BCL101
|
4.2
|
0.0
|
1.0
|
O
|
A:ALA14
|
4.2
|
0.0
|
1.0
|
CG
|
J:HIS25
|
4.2
|
0.0
|
1.0
|
C3D
|
J:BCL101
|
4.3
|
0.0
|
1.0
|
C
|
A:ALA14
|
4.3
|
0.0
|
1.0
|
ND1
|
J:HIS25
|
4.3
|
0.0
|
1.0
|
C2D
|
J:BCL101
|
4.3
|
0.0
|
1.0
|
C2C
|
J:BCL101
|
4.3
|
0.0
|
1.0
|
C3A
|
J:BCL101
|
4.4
|
0.0
|
1.0
|
HHC
|
J:BCL101
|
4.4
|
0.0
|
1.0
|
C2A
|
J:BCL101
|
4.4
|
0.0
|
1.0
|
CA
|
A:ALA14
|
4.5
|
0.0
|
1.0
|
HHD
|
J:BCL101
|
4.5
|
0.0
|
1.0
|
HHB
|
J:BCL101
|
4.5
|
0.0
|
1.0
|
C3C
|
J:BCL101
|
4.5
|
0.0
|
1.0
|
HMA2
|
J:BCL101
|
4.6
|
0.0
|
1.0
|
H2C
|
J:BCL101
|
4.7
|
0.0
|
1.0
|
HA2
|
A:GLY15
|
4.7
|
0.0
|
1.0
|
HA
|
A:ALA14
|
4.7
|
0.0
|
1.0
|
HB2
|
A:PHE18
|
4.8
|
0.0
|
1.0
|
N
|
A:GLY15
|
4.8
|
0.0
|
1.0
|
CBD
|
J:BCL101
|
4.9
|
0.0
|
1.0
|
|
Reference:
J.T.Nielsen,
N.V.Kulminskaya,
M.Bjerring,
J.M.Linnanto,
M.Ratsep,
M.O.Pedersen,
P.H.Lambrev,
M.Dorogi,
G.Garab,
K.Thomsen,
C.Jegerschold,
N.U.Frigaard,
M.Lindahl,
N.C.Nielsen.
In Situ High-Resolution Structure of the Baseplate Antenna Complex in Chlorobaculum Tepidum. Nat Commun V. 7 12454 2016.
ISSN: ESSN 2041-1723
PubMed: 27534696
DOI: 10.1038/NCOMMS12454
Page generated: Sun Sep 29 19:50:03 2024
|