Magnesium in PDB 5ld2: Cryo-Em Structure of Recbcd+Dna Complex Revealing Activated Nuclease Domain

All present enzymatic activity of Cryo-Em Structure of Recbcd+Dna Complex Revealing Activated Nuclease Domain:
3.1.11.5;

The binding sites of Magnesium atom in the Cryo-Em Structure of Recbcd+Dna Complex Revealing Activated Nuclease Domain (pdb code 5ld2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Recbcd+Dna Complex Revealing Activated Nuclease Domain, PDB code: 5ld2:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Recbcd+Dna Complex Revealing Activated Nuclease Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Recbcd+Dna Complex Revealing Activated Nuclease Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1502 b:63.4 occ:1.00 OG1 B:THR30 2.0 78.1 1.0 O2B B:ANP1501 2.1 89.6 1.0 O2G B:ANP1501 2.2 0.0 1.0 OE2 B:GLU385 3.0 0.8 1.0 CB B:THR30 3.1 78.5 1.0 PG B:ANP1501 3.5 93.6 1.0 PB B:ANP1501 3.5 88.9 1.0 N B:THR30 3.9 43.0 1.0 N3B B:ANP1501 4.0 86.5 1.0 O2A B:ANP1501 4.0 0.6 1.0 CA B:THR30 4.0 42.4 1.0 CG2 B:THR30 4.1 77.9 1.0 O3G B:ANP1501 4.2 91.4 1.0 CD B:GLU385 4.2 0.6 1.0 O1B B:ANP1501 4.3 87.9 1.0 OD2 B:ASP384 4.4 97.7 1.0 CA B:GLY746 4.6 53.8 1.0 O3A B:ANP1501 4.6 99.2 1.0 O1A B:ANP1501 4.6 0.7 1.0 PA B:ANP1501 4.6 0.8 1.0 O1G B:ANP1501 4.7 100.0 1.0 OD1 B:ASP384 4.8 0.5 1.0 CB B:LYS29 5.0 47.1 1.0 OE1 B:GLU385 5.0 1.0 1.0

M.Wilkinson, Y.Chaban, D.B.Wigley. Mechanism For Nuclease Regulation in Recbcd. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27644322
DOI: 10.7554/ELIFE.18227