Magnesium in PDB 5lj5: Overall Structure of the Yeast Spliceosome Immediately After Branching.

All present enzymatic activity of Overall Structure of the Yeast Spliceosome Immediately After Branching.:
3.6.4.13;

The structure of Overall Structure of the Yeast Spliceosome Immediately After Branching. also contains other interesting chemical elements:

Zinc

(Zn)

7 atoms

The binding sites of Magnesium atom in the Overall Structure of the Yeast Spliceosome Immediately After Branching. (pdb code 5lj5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Overall Structure of the Yeast Spliceosome Immediately After Branching., PDB code: 5lj5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Overall Structure of the Yeast Spliceosome Immediately After Branching.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Overall Structure of the Yeast Spliceosome Immediately After Branching. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1001 b:58.7 occ:1.00 OP1 V:G78 2.3 71.7 1.0 O3' E:G-1 2.6 86.2 1.0 OP1 V:G60 2.9 0.1 1.0 P V:G78 3.6 69.7 1.0 O5' V:G60 3.7 0.4 1.0 P V:G60 3.8 0.0 1.0 C5' V:G60 3.8 0.5 1.0 O3' V:G77 3.9 61.9 1.0 C3' E:G-1 4.0 82.8 1.0 O2' E:G-1 4.1 84.3 1.0 OP1 I:G1 4.3 85.5 1.0 OP2 V:G78 4.3 68.1 1.0 OP2 I:G1 4.4 87.3 1.0 OP2 V:C61 4.5 0.6 1.0 C2' E:G-1 4.6 85.3 1.0 OP1 V:C61 4.6 0.8 1.0 OP2 V:G60 4.6 0.3 1.0 MG V:MG201 4.7 85.4 1.0 O5' V:G78 4.7 69.8 1.0 C4' E:G-1 4.8 74.8 1.0 O3' V:G60 4.8 0.4 1.0 OP1 V:G77 4.8 59.7 1.0 P V:C61 4.8 0.3 1.0 C5' V:G77 4.9 60.2 1.0 P I:G1 4.9 88.2 1.0 C3' V:G77 5.0 56.3 1.0

Magnesium binding site 2 out of 2 in the Overall Structure of the Yeast Spliceosome Immediately After Branching.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Overall Structure of the Yeast Spliceosome Immediately After Branching. within 5.0Å range: probe atom residue distance (Å) B Occ V:Mg201 b:85.4 occ:1.00 C5' V:U80 2.4 0.9 1.0 OP2 V:U80 2.5 0.8 1.0 OP2 V:G60 3.3 0.3 1.0 O5' V:U80 3.3 0.5 1.0 C4' V:U80 3.5 0.6 1.0 P V:U80 3.5 0.6 1.0 OP1 I:G1 3.7 85.5 1.0 OP1 V:G60 4.1 0.1 1.0 P V:G60 4.2 0.0 1.0 OP1 V:A59 4.3 0.9 1.0 O3' V:U80 4.4 0.3 1.0 OP1 V:U80 4.4 0.9 1.0 OP1 V:G78 4.5 71.7 1.0 C3' V:U80 4.5 1.0 1.0 O4' V:U80 4.5 0.7 1.0 MG E:MG1001 4.7 58.7 1.0 O3' V:A79 4.7 0.7 1.0 O2' I:A70 4.9 87.4 1.0 P I:G1 4.9 88.2 1.0 C3' V:A79 4.9 89.9 1.0 O5' V:G60 5.0 0.4 1.0

W.P.Galej, M.E.Wilkinson, S.M.Fica, C.Oubridge, A.J.Newman, K.Nagai. Cryo-Em Structure of the Spliceosome Immediately After Branching. Nature V. 537 197 2016.
ISSN: ESSN 1476-4687
PubMed: 27459055
DOI: 10.1038/NATURE19316