Magnesium in PDB 5ljv: Mamk Double Helical Filament

The binding sites of Magnesium atom in the Mamk Double Helical Filament (pdb code 5ljv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Mamk Double Helical Filament, PDB code: 5ljv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Mamk Double Helical Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mamk Double Helical Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:65.9 occ:1.00 O2B A:ADP402 2.3 68.7 1.0 OE1 A:GLU143 2.6 0.4 1.0 O1B A:ADP402 2.9 65.7 1.0 PB A:ADP402 3.0 66.6 1.0 OE2 A:GLU143 3.1 0.5 1.0 CD A:GLU143 3.2 0.7 1.0 O1A A:ADP402 3.6 57.6 1.0 OD2 A:ASP161 3.7 0.9 1.0 O3A A:ADP402 3.8 58.9 1.0 OD1 A:ASP17 4.0 0.3 1.0 PA A:ADP402 4.1 57.7 1.0 OD1 A:ASP161 4.2 0.9 1.0 O3B A:ADP402 4.3 64.9 1.0 OD2 A:ASP17 4.3 0.0 1.0 CG A:ASP161 4.4 91.4 1.0 CA A:GLY163 4.4 45.5 1.0 CA A:GLY19 4.6 72.6 1.0 CG A:ASP17 4.6 0.4 1.0 O2A A:ADP402 4.7 64.8 1.0 CG A:GLU143 4.7 0.7 1.0

Magnesium binding site 2 out of 6 in the Mamk Double Helical Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mamk Double Helical Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:66.9 occ:1.00 O1B B:ADP402 2.3 69.7 1.0 OE1 B:GLU143 2.5 0.5 1.0 O2B B:ADP402 2.9 66.7 1.0 PB B:ADP402 3.0 67.6 1.0 OE2 B:GLU143 3.1 0.5 1.0 CD B:GLU143 3.2 0.7 1.0 O1A B:ADP402 3.5 58.6 1.0 OD2 B:ASP161 3.6 0.9 1.0 O3A B:ADP402 3.8 59.9 1.0 OD1 B:ASP17 4.1 0.4 1.0 PA B:ADP402 4.1 58.7 1.0 OD1 B:ASP161 4.2 0.3 1.0 CG B:ASP161 4.3 92.4 1.0 OD2 B:ASP17 4.3 0.0 1.0 O3B B:ADP402 4.3 65.9 1.0 CA B:GLY163 4.5 46.5 1.0 CG B:ASP17 4.7 0.2 1.0 CA B:GLY19 4.7 73.6 1.0 CG B:GLU143 4.7 0.7 1.0 O2A B:ADP402 4.8 65.8 1.0

Magnesium binding site 3 out of 6 in the Mamk Double Helical Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mamk Double Helical Filament within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:65.9 occ:1.00 O2B C:ADP402 2.3 68.7 1.0 OE1 C:GLU143 2.6 0.1 1.0 O1B C:ADP402 3.0 65.7 1.0 OE2 C:GLU143 3.0 0.5 1.0 PB C:ADP402 3.1 66.7 1.0 CD C:GLU143 3.2 0.6 1.0 O1A C:ADP402 3.4 57.6 1.0 O3A C:ADP402 3.7 59.0 1.0 OD2 C:ASP161 3.8 1.0 1.0 OD1 C:ASP17 4.0 0.9 1.0 PA C:ADP402 4.1 57.7 1.0 OD2 C:ASP17 4.1 0.9 1.0 OD1 C:ASP161 4.2 0.9 1.0 CG C:ASP161 4.4 91.5 1.0 O3B C:ADP402 4.4 65.0 1.0 CA C:GLY163 4.5 45.5 1.0 CG C:ASP17 4.5 0.1 1.0 CA C:GLY19 4.6 72.6 1.0 CG C:GLU143 4.8 0.7 1.0 O2A C:ADP402 4.8 64.8 1.0

Magnesium binding site 4 out of 6 in the Mamk Double Helical Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Mamk Double Helical Filament within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:66.1 occ:1.00 O2B D:ADP402 2.4 68.9 1.0 OE1 D:GLU143 2.7 0.3 1.0 O1B D:ADP402 3.0 65.9 1.0 OE2 D:GLU143 3.0 0.7 1.0 PB D:ADP402 3.1 66.8 1.0 CD D:GLU143 3.2 0.9 1.0 O1A D:ADP402 3.3 57.8 1.0 O3A D:ADP402 3.7 59.1 1.0 OD2 D:ASP161 3.7 0.1 1.0 PA D:ADP402 4.0 57.9 1.0 OD1 D:ASP17 4.1 0.1 1.0 OD1 D:ASP161 4.1 0.1 1.0 OD2 D:ASP17 4.2 0.5 1.0 CG D:ASP161 4.3 91.7 1.0 O3B D:ADP402 4.5 65.1 1.0 CA D:GLY163 4.5 45.7 1.0 CG D:ASP17 4.6 0.8 1.0 CA D:GLY19 4.7 72.8 1.0 CG D:GLU143 4.7 0.9 1.0 O2A D:ADP402 4.8 65.0 1.0

Magnesium binding site 5 out of 6 in the Mamk Double Helical Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Mamk Double Helical Filament within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg401 b:66.3 occ:1.00 O1B E:ADP402 2.3 69.1 1.0 OE1 E:GLU143 2.6 0.3 1.0 O2B E:ADP402 3.0 66.1 1.0 OE2 E:GLU143 3.1 0.9 1.0 PB E:ADP402 3.1 67.1 1.0 CD E:GLU143 3.2 0.5 1.0 O1A E:ADP402 3.4 58.0 1.0 OD2 E:ASP161 3.6 0.4 1.0 O3A E:ADP402 3.8 59.4 1.0 PA E:ADP402 4.1 58.1 1.0 OD1 E:ASP161 4.1 0.3 1.0 OD1 E:ASP17 4.1 0.2 1.0 CG E:ASP161 4.2 91.9 1.0 OD2 E:ASP17 4.3 0.9 1.0 O3B E:ADP402 4.4 65.4 1.0 CA E:GLY163 4.5 45.9 1.0 CG E:ASP17 4.7 0.7 1.0 CG E:GLU143 4.7 0.1 1.0 CA E:GLY19 4.7 73.0 1.0 O2A E:ADP402 4.8 65.2 1.0

Magnesium binding site 6 out of 6 in the Mamk Double Helical Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Mamk Double Helical Filament within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg401 b:65.5 occ:1.00 O2B F:ADP402 2.3 68.3 1.0 OE1 F:GLU143 2.6 0.9 1.0 O1B F:ADP402 2.9 65.2 1.0 PB F:ADP402 3.0 66.2 1.0 OE2 F:GLU143 3.1 0.1 1.0 CD F:GLU143 3.2 0.3 1.0 O1A F:ADP402 3.5 57.2 1.0 OD2 F:ASP161 3.7 0.5 1.0 O3A F:ADP402 3.7 58.5 1.0 PA F:ADP402 4.1 57.3 1.0 OD1 F:ASP17 4.1 0.4 1.0 OD1 F:ASP161 4.2 0.5 1.0 CG F:ASP161 4.3 91.0 1.0 OD2 F:ASP17 4.3 0.7 1.0 O3B F:ADP402 4.3 64.5 1.0 CA F:GLY163 4.4 45.0 1.0 CG F:ASP17 4.7 0.5 1.0 CA F:GLY19 4.7 72.2 1.0 O2A F:ADP402 4.7 64.4 1.0 CG F:GLU143 4.7 0.2 1.0

J.Lowe, S.He, S.H.Scheres, C.G.Savva. X-Ray and Cryo-Em Structures of Monomeric and Filamentous Actin-Like Protein Mamk Reveal Changes Associated with Polymerization. Proc. Natl. Acad. Sci. V. 113 13396 2016U.S.A..
ISSN: ESSN 1091-6490
PubMed: 27821762
DOI: 10.1073/PNAS.1612034113