Magnesium in PDB 5lm9: Structure of E. Coli Nusa

Protein crystallography data

The structure of Structure of E. Coli Nusa, PDB code: 5lm9 was solved by N.Said, G.Weber, K.Santos, M.C.Wahl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.95 / 2.14
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 74.688, 147.182, 52.387, 90.00, 112.56, 90.00
R / Rfree (%) 21.5 / 24.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of E. Coli Nusa (pdb code 5lm9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of E. Coli Nusa, PDB code: 5lm9:

Magnesium binding site 1 out of 1 in 5lm9

Go back to Magnesium Binding Sites List in 5lm9
Magnesium binding site 1 out of 1 in the Structure of E. Coli Nusa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of E. Coli Nusa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg506

b:70.5
occ:1.00
CD2 A:HIS348 3.1 51.7 1.0
OD2 A:ASP306 3.1 44.6 1.0
OE1 A:GLU351 3.2 98.6 1.0
NE2 A:HIS348 3.2 66.9 1.0
O A:HOH662 3.5 52.4 1.0
O A:HOH613 3.7 57.1 1.0
CG1 A:VAL297 3.7 49.6 1.0
OE2 A:GLU351 3.7 81.1 1.0
CD A:GLU351 3.8 87.5 1.0
CB A:VAL297 3.9 44.6 1.0
CG A:ASP306 3.9 52.4 1.0
CD1 A:LEU344 4.1 39.0 1.0
CB A:ASP306 4.2 39.6 1.0
CG2 A:VAL297 4.3 52.3 1.0
CG A:HIS348 4.4 75.0 1.0
CD A:LYS347 4.5 57.0 1.0
CE1 A:HIS348 4.5 72.2 1.0
CE A:LYS347 4.8 61.1 1.0
NZ A:LYS347 4.8 56.7 1.0
CG A:LYS347 4.8 62.1 1.0
OD1 A:ASP306 5.0 50.1 1.0

Reference:

N.Said, F.Krupp, E.Anedchenko, K.F.Santos, O.Dybkov, Y.H.Huang, C.T.Lee, B.Loll, E.Behrmann, J.Burger, T.Mielke, J.Loerke, H.Urlaub, C.M.T.Spahn, G.Weber, M.C.Wahl. Structural Basis For Lambda N-Dependent Processive Transcription Antitermination. Nat Microbiol V. 2 17062 2017.
ISSN: ESSN 2058-5276
PubMed: 28452979
DOI: 10.1038/NMICROBIOL.2017.62
Page generated: Mon Dec 14 20:47:38 2020

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