Magnesium in PDB 5lmg: Structure of C-Terminal Domain From S. Cerevisiae PAT1 Decapping Activator Bound to DCP2 HLM10 Peptide (Region 954-970)

The structure of Structure of C-Terminal Domain From S. Cerevisiae PAT1 Decapping Activator Bound to DCP2 HLM10 Peptide (Region 954-970), PDB code: 5lmg was solved by C.Charenton, C.Gaudon-Plesse, Z.Fourati, V.Taverniti, R.Back, O.Kolesnikova, B.Seraphin, M.Graille, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.82 / 1.89
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	97.686, 123.029, 126.562, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 23.5

The binding sites of Magnesium atom in the Structure of C-Terminal Domain From S. Cerevisiae PAT1 Decapping Activator Bound to DCP2 HLM10 Peptide (Region 954-970) (pdb code 5lmg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of C-Terminal Domain From S. Cerevisiae PAT1 Decapping Activator Bound to DCP2 HLM10 Peptide (Region 954-970), PDB code: 5lmg:

Magnesium binding site 1 out of 1 in the Structure of C-Terminal Domain From S. Cerevisiae PAT1 Decapping Activator Bound to DCP2 HLM10 Peptide (Region 954-970)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of C-Terminal Domain From S. Cerevisiae PAT1 Decapping Activator Bound to DCP2 HLM10 Peptide (Region 954-970) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:51.6 occ:0.50 O A:HOH969 2.1 45.3 1.0 OD2 A:ASP544 2.2 54.5 1.0 O A:HOH1003 2.3 58.4 1.0 CG A:ASP544 3.2 46.0 1.0 OD1 A:ASP544 3.5 43.7 1.0 O A:HOH989 3.9 64.9 1.0 O A:HOH974 4.1 52.8 1.0 CB A:ASP544 4.5 46.6 1.0 O A:HOH1011 4.7 50.8 1.0

C.Charenton, C.Gaudon-Plesse, Z.Fourati, V.Taverniti, R.Back, O.Kolesnikova, B.Seraphin, M.Graille. A Unique Surface on PAT1 C-Terminal Domain Directly Interacts with DCP2 Decapping Enzyme and XRN1 5'-3' Mrna Exonuclease in Yeast. Proc. Natl. Acad. Sci. V. 114 E9493 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29078363
DOI: 10.1073/PNAS.1711680114