Magnesium in PDB 5lmo: Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)

The structure of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 108;

Binding sites:

The binding sites of Magnesium atom in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) (pdb code 5lmo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 108 binding sites of Magnesium where determined in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B), PDB code: 5lmo:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:50.0 occ:1.00 OP2 A:G1530 3.3 50.0 1.0 OP1 A:A1502 3.6 50.0 1.0 OP2 A:A1503 3.8 50.0 1.0 O3' A:G1392 3.9 50.0 1.0 C4' A:G1392 4.0 50.0 1.0 O2' A:G1392 4.0 50.0 1.0 O3' A:G1530 4.3 50.0 1.0 O5' A:G1530 4.3 50.0 1.0 C3' A:G1392 4.4 50.0 1.0 P A:G1530 4.5 50.0 1.0 C4' A:G1530 4.5 50.0 1.0 O2' A:G1530 4.7 50.0 1.0 P A:A1502 4.7 50.0 1.0 C5' A:G1392 4.8 50.0 1.0 C2' A:G1392 4.8 50.0 1.0 O4' A:G1392 4.8 50.0 1.0 C3' A:G1530 4.9 50.0 1.0 C5' A:G1530 4.9 50.0 1.0 OP1 A:U1393 5.0 50.0 1.0

Magnesium binding site 2 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:50.0 occ:1.00 NZ Q:LYS67 2.3 50.0 1.0 OP2 A:U252 2.6 50.0 1.0 OP2 A:C267 3.0 50.0 1.0 OP2 A:C268 3.3 50.0 1.0 CE Q:LYS67 3.4 50.0 1.0 O3' A:G251 3.4 50.0 1.0 P A:U252 3.6 50.0 1.0 O2' A:G266 3.7 50.0 1.0 P A:C267 4.3 50.0 1.0 P A:C268 4.3 50.0 1.0 CD Q:LYS67 4.3 50.0 1.0 OP1 A:C268 4.4 50.0 1.0 O2' A:G251 4.5 50.0 1.0 OP2 A:U253 4.5 50.0 1.0 O5' A:U252 4.6 50.0 1.0 OP1 A:U252 4.7 50.0 1.0 OP1 A:C267 4.7 50.0 1.0 C3' A:G251 4.7 50.0 1.0 O5' A:C267 5.0 50.0 1.0 O3' A:C267 5.0 50.0 1.0

Magnesium binding site 3 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:50.0 occ:1.00 OP1 A:A315 2.1 50.0 1.0 P A:A315 3.0 50.0 1.0 OP2 A:A315 3.3 50.0 1.0 C5' A:A315 3.7 50.0 1.0 O5' A:A315 3.8 50.0 1.0 N7 A:G318 3.8 50.0 1.0 C8 A:G318 4.3 50.0 1.0 O3' A:C314 4.4 50.0 1.0 OP2 A:G317 4.5 50.0 1.0 C4' A:A315 4.6 50.0 1.0 OP1 A:G316 4.7 50.0 1.0 OP2 A:G318 4.7 50.0 1.0 N7 A:G319 4.9 50.0 1.0

Magnesium binding site 4 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:50.0 occ:1.00 O6 A:G148 3.5 50.0 1.0 OP2 A:A172 3.5 50.0 1.0 N7 A:G148 3.6 50.0 1.0 C6 A:G148 4.2 50.0 1.0 C5 A:G148 4.2 50.0 1.0 OP1 A:A171 4.6 50.0 1.0 C8 A:G148 4.7 50.0 1.0 O6 A:G147 4.9 50.0 1.0 O5' A:A171 4.9 50.0 1.0 P A:A172 5.0 50.0 1.0

Magnesium binding site 5 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:50.0 occ:1.00 O4 A:U1512 3.1 50.0 1.0 O4 A:U1510 3.2 50.0 1.0 O6 A:G1511 3.5 50.0 1.0 O4 A:U1522 3.6 50.0 1.0 N6 A:A1513 3.9 50.0 1.0 C4 A:U1510 3.9 50.0 1.0 O6 A:G1523 4.2 50.0 1.0 C4 A:U1512 4.3 50.0 1.0 C4 A:U1522 4.4 50.0 1.0 C5 A:U1510 4.5 50.0 1.0 C6 A:G1511 4.6 50.0 1.0 C5 A:U1522 4.7 50.0 1.0 N3 A:U1510 4.8 50.0 1.0 N3 A:U1512 4.9 50.0 1.0 C6 A:A1513 4.9 50.0 1.0 N4 A:C1524 4.9 50.0 1.0 N7 A:G1511 4.9 50.0 1.0

Magnesium binding site 6 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:50.0 occ:1.00 OP1 A:U13 1.4 50.0 1.0 P A:U13 2.8 50.0 1.0 O3' A:U12 3.1 50.0 1.0 OP1 A:G527 3.4 50.0 1.0 OP2 A:A914 3.5 50.0 1.0 OP2 A:U14 3.5 50.0 1.0 OP2 A:U13 3.8 50.0 1.0 O5' A:U13 3.8 50.0 1.0 O3' A:C526 3.8 50.0 1.0 P A:G527 3.8 50.0 1.0 OP2 A:G527 3.9 50.0 1.0 OP1 A:A914 3.9 50.0 1.0 P A:A914 4.2 50.0 1.0 C4' A:U13 4.4 50.0 1.0 C5' A:U13 4.4 50.0 1.0 C3' A:U12 4.5 50.0 1.0 O3' A:U13 4.7 50.0 1.0 P A:U14 4.7 50.0 1.0 O2' A:U12 4.8 50.0 1.0 MG A:MG1657 5.0 50.0 1.0

Magnesium binding site 7 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:50.0 occ:1.00 OP2 A:G107 2.4 50.0 1.0 P A:G107 3.4 50.0 1.0 O2' A:G324 3.5 50.0 1.0 OP1 A:G107 3.6 50.0 1.0 N7 A:A325 3.7 50.0 1.0 O3' A:G324 3.9 50.0 1.0 O6 A:G326 4.0 50.0 1.0 C8 A:A325 4.2 50.0 1.0 O3' A:C106 4.3 50.0 1.0 O5' A:C106 4.3 50.0 1.0 OP1 A:C106 4.4 50.0 1.0 C4' A:G324 4.6 50.0 1.0 C2' A:G324 4.6 50.0 1.0 C3' A:G324 4.6 50.0 1.0 O5' A:G107 4.7 50.0 1.0 OP1 A:A325 4.7 50.0 1.0 P A:C106 4.7 50.0 1.0 C3' A:C106 4.8 50.0 1.0 NH2 T:ARG15 4.9 50.0 1.0 C6 A:G326 4.9 50.0 1.0 OP2 A:C106 4.9 50.0 1.0 C5' A:C106 5.0 50.0 1.0 P A:A325 5.0 50.0 1.0

Magnesium binding site 8 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:50.0 occ:1.00 OP1 A:U793 2.4 50.0 1.0 OP2 A:U793 2.5 50.0 1.0 P A:U793 2.9 50.0 1.0 O3' A:A792 4.1 50.0 1.0 N7 A:G786 4.1 50.0 1.0 O6 A:G785 4.1 50.0 1.0 O5' A:U793 4.1 50.0 1.0 N6 A:A787 4.3 50.0 1.0 O6 A:G786 4.3 50.0 1.0 N7 A:G785 4.3 50.0 1.0 MG A:MG1609 4.4 50.0 1.0 C6 A:G785 4.7 50.0 1.0 C5 A:G785 4.8 50.0 1.0 C5 A:G786 4.9 50.0 1.0 C6 A:G786 5.0 50.0 1.0

Magnesium binding site 9 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:50.0 occ:1.00 O4 A:U788 3.1 50.0 1.0 N7 A:A787 3.3 50.0 1.0 C8 A:A787 4.1 50.0 1.0 C4 A:U788 4.1 50.0 1.0 N7 A:G786 4.2 50.0 1.0 C5 A:A787 4.3 50.0 1.0 N6 A:A787 4.4 50.0 1.0 MG A:MG1608 4.4 50.0 1.0 C8 A:G786 4.4 50.0 1.0 O3' A:A792 4.5 50.0 1.0 OP2 A:U793 4.5 50.0 1.0 C6 A:A787 4.8 50.0 1.0 C5 A:U788 4.9 50.0 1.0 P A:U793 4.9 50.0 1.0

Magnesium binding site 10 out of 108 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1B) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:50.0 occ:1.00 O4 A:U287 4.0 50.0 1.0 N7 A:G285 4.1 50.0 1.0 N7 A:G286 4.2 50.0 1.0 O6 A:G286 4.3 50.0 1.0 OP2 A:G285 4.4 50.0 1.0 O6 A:G285 4.5 50.0 1.0 OP2 A:A119 4.6 50.0 1.0 C3' A:A119 4.7 50.0 1.0 O3' A:A119 4.7 50.0 1.0 C5 A:G285 4.7 50.0 1.0 C6 A:G285 4.9 50.0 1.0 C8 A:G285 4.9 50.0 1.0 O5' A:A119 5.0 50.0 1.0 C5 A:G286 5.0 50.0 1.0 C4 A:U287 5.0 50.0 1.0 C6 A:G286 5.0 50.0 1.0

T.Hussain, J.L.Llacer, B.T.Wimberly, J.S.Kieft, V.Ramakrishnan. Large-Scale Movements of IF3 and Trna During Bacterial Translation Initiation. Cell V. 167 133 2016.
ISSN: ISSN 1097-4172
PubMed: 27662086
DOI: 10.1016/J.CELL.2016.08.074