Magnesium in PDB 5lmr: Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2B)

The structure of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2B) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2B) (pdb code 5lmr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2B), PDB code: 5lmr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2B) within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg101 b:50.0 occ:0.63 CG2 W:THR6 3.5 50.0 1.0 C5' A:A520 3.7 50.0 1.0 OD1 W:ASP5 3.9 50.0 1.0 OP1 A:A520 4.1 50.0 1.0 OG1 W:THR6 4.2 50.0 1.0 CB W:THR6 4.3 50.0 1.0 O W:GLU3 4.3 50.0 1.0 CG2 W:THR58 4.3 50.0 1.0 CA W:THR6 4.5 50.0 1.0 C4' A:A520 4.6 50.0 1.0 NZ L:LYS54 4.7 50.0 1.0 N W:THR6 4.8 50.0 1.0 O5' A:A520 4.8 50.0 1.0 O2' A:C519 4.8 50.0 1.0 CA W:THR58 5.0 50.0 1.0 OG1 W:THR58 5.0 50.0 1.0

Magnesium binding site 2 out of 2 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2B) within 5.0Å range: probe atom residue distance (Å) B Occ Z:Mg101 b:50.0 occ:1.00 N4 Z:C39 4.4 50.0 1.0 OP2 Z:A38 4.6 50.0 1.0 N4 Z:C40 4.9 50.0 1.0

T.Hussain, J.L.Llacer, B.T.Wimberly, J.S.Kieft, V.Ramakrishnan. Large-Scale Movements of IF3 and Trna During Bacterial Translation Initiation. Cell V. 167 133 2016.
ISSN: ISSN 1097-4172
PubMed: 27662086
DOI: 10.1016/J.CELL.2016.08.074