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Magnesium in PDB 5lmv: Structure of Bacterial 30S-IF1-IF2-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-III)

Other elements in 5lmv:

The structure of Structure of Bacterial 30S-IF1-IF2-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-III) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Bacterial 30S-IF1-IF2-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-III) (pdb code 5lmv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Bacterial 30S-IF1-IF2-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-III), PDB code: 5lmv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5lmv

Go back to Magnesium Binding Sites List in 5lmv
Magnesium binding site 1 out of 2 in the Structure of Bacterial 30S-IF1-IF2-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-III)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bacterial 30S-IF1-IF2-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-III) within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Mg101

b:50.0
occ:0.63
OE2 W:GLU56 3.1 50.0 1.0
OG1 W:THR6 3.4 50.0 1.0
O2' A:C519 3.5 50.0 1.0
CG2 W:THR6 3.5 50.0 1.0
CE W:LYS4 3.6 50.0 1.0
CD W:LYS4 3.8 50.0 1.0
CD W:GLU56 3.9 50.0 1.0
NZ W:LYS4 4.0 50.0 1.0
CB W:THR6 4.0 50.0 1.0
CG W:LYS4 4.4 50.0 1.0
CG W:GLU56 4.4 50.0 1.0
NZ W:LYS2 4.5 50.0 1.0
NH1 W:ARG66 4.6 50.0 1.0
OE1 W:GLU56 4.7 50.0 1.0
O W:GLU3 4.8 50.0 1.0
C2' A:C519 4.9 50.0 1.0

Magnesium binding site 2 out of 2 in 5lmv

Go back to Magnesium Binding Sites List in 5lmv
Magnesium binding site 2 out of 2 in the Structure of Bacterial 30S-IF1-IF2-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-III)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bacterial 30S-IF1-IF2-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-III) within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Mg102

b:50.0
occ:1.00
OP2 Z:A37 2.4 50.0 1.0
P Z:A37 3.0 50.0 1.0
OP1 Z:A37 3.2 50.0 1.0
O5' Z:A37 3.5 50.0 1.0
N4 Z:C39 3.5 50.0 1.0
O6 Z:G31 4.1 50.0 1.0
OP2 Z:A38 4.6 50.0 1.0
O3' Z:U36 4.6 50.0 1.0
N7 Z:A38 4.7 50.0 1.0
C4 Z:C39 4.7 50.0 1.0
C5' Z:A37 4.7 50.0 1.0
N4 Z:OMC32 4.7 50.0 1.0

Reference:

T.Hussain, J.L.Llacer, B.T.Wimberly, J.S.Kieft, V.Ramakrishnan. Large-Scale Movements of IF3 and Trna During Bacterial Translation Initiation. Cell V. 167 133 2016.
ISSN: ISSN 1097-4172
PubMed: 27662086
DOI: 10.1016/J.CELL.2016.08.074
Page generated: Mon Dec 14 20:48:37 2020

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