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Magnesium in PDB 5lys: The Crystal Structure of 7SK 5'-Hairpin - Gold Derivative

Protein crystallography data

The structure of The Crystal Structure of 7SK 5'-Hairpin - Gold Derivative, PDB code: 5lys was solved by D.Martinez-Zapien, P.Legrand, A.G.Mcewen, S.Pasquali, A.-C.Dock-Bregeon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.32
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.320, 47.830, 69.230, 90.00, 105.54, 90.00
R / Rfree (%) 18.5 / 22.7

Other elements in 5lys:

The structure of The Crystal Structure of 7SK 5'-Hairpin - Gold Derivative also contains other interesting chemical elements:

Gold (Au) 2 atoms
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of 7SK 5'-Hairpin - Gold Derivative (pdb code 5lys). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of 7SK 5'-Hairpin - Gold Derivative, PDB code: 5lys:

Magnesium binding site 1 out of 1 in 5lys

Go back to Magnesium Binding Sites List in 5lys
Magnesium binding site 1 out of 1 in the The Crystal Structure of 7SK 5'-Hairpin - Gold Derivative


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of 7SK 5'-Hairpin - Gold Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg101

b:40.7
occ:1.00
O B:HOH293 2.1 64.0 1.0
O B:HOH255 2.4 57.6 1.0
O B:HOH291 2.5 43.5 1.0
O B:HOH300 2.5 44.2 1.0
O B:HOH225 2.6 36.1 1.0
O B:HOH301 2.8 61.5 1.0
O B:HOH250 3.6 29.9 1.0
OP2 B:G70 3.8 43.6 1.0
O B:HOH219 4.5 35.7 1.0
N7 B:G70 4.6 29.1 1.0
O B:HOH207 4.6 31.3 1.0
O B:HOH247 4.6 35.8 1.0
C8 B:G70 4.8 30.3 1.0
O B:HOH267 4.9 29.0 1.0
P B:G70 4.9 43.8 1.0
O5' B:G70 5.0 42.1 1.0
OP2 B:C71 5.0 36.1 1.0

Reference:

D.Martinez-Zapien, P.Legrand, A.G.Mcewen, F.Proux, T.Cragnolini, S.Pasquali, A.C.Dock-Bregeon. The Crystal Structure of the 5 Functional Domain of the Transcription Riboregulator 7SK. Nucleic Acids Res. V. 45 3568 2017.
ISSN: ESSN 1362-4962
PubMed: 28082395
DOI: 10.1093/NAR/GKW1351
Page generated: Mon Dec 14 20:49:45 2020

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