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Magnesium in PDB 5m2t: X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution

Enzymatic activity of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution

All present enzymatic activity of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution, PDB code: 5m2t was solved by I.I.Prokofev, A.A.Lashkov, A.G.Gabdulkhakov, C.Betzel, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.46 / 1.03
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 64.323, 72.039, 89.193, 110.56, 107.53, 85.83
R / Rfree (%) 11.8 / 13.7

Other elements in 5m2t:

The structure of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms
Sodium (Na) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution (pdb code 5m2t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution, PDB code: 5m2t:

Magnesium binding site 1 out of 1 in 5m2t

Go back to Magnesium Binding Sites List in 5m2t
Magnesium binding site 1 out of 1 in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg304

b:16.2
occ:0.34
 O D:HOH453 2.0 21.6 0.5
O D:HOH656 2.1 20.1 1.0
O D:HOH606 2.2 19.9 1.0
O D:HOH543 2.3 20.5 1.0
O D:HOH640 3.2 71.9 1.0
HA D:ALA206 3.6 8.7 1.0
O E:HOH514 4.1 16.0 1.0
O D:HOH515 4.1 8.9 1.0
O D:HOH649 4.2 45.6 1.0
O E:HOH557 4.2 11.8 1.0
O D:HOH671 4.3 34.1 1.0
O D:ALA206 4.4 10.2 1.0
OD1 D:ASP132 4.4 10.2 0.8
O D:HOH562 4.4 13.4 1.0
O D:LEU210 4.4 9.8 1.0
CA D:ALA206 4.5 7.3 1.0
HA D:ASP132 4.5 8.5 1.0
HB2 D:ASP132 4.5 10.2 1.0
HB1 D:ALA206 4.7 9.5 1.0
O E:HOH544 4.7 11.3 1.0
CL D:CL302 4.8 19.1 0.7
HG2 D:LYS211 4.9 14.0 0.6
HA D:LYS211 4.9 10.0 0.6
HA D:LYS211 4.9 10.0 0.4
HA2 D:GLY209 4.9 11.8 1.0
C D:ALA206 4.9 7.9 1.0
O E:HOH539 4.9 28.6 1.0

Reference:

I.I.Prokofev, A.A.Lashkov, A.G.Gabdulkhakov, M.V.Dontsova, C.Betzel, A.M.Mikhailov. X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution To Be Published.
Page generated: Sun Sep 29 21:09:21 2024

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