Magnesium in PDB 5m7o: Crystal Structure of Ntrx From Brucella Abortus Processed with the Crystaldirect Automated Mounting and Cryo-Cooling Technology

The structure of Crystal Structure of Ntrx From Brucella Abortus Processed with the Crystaldirect Automated Mounting and Cryo-Cooling Technology, PDB code: 5m7o was solved by I.Cornaciu, I.Fernandez, G.Hoffmann, M.C.Carrica, F.A.Goldbaum, J.A.Marquez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.02 / 2.20
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	124.778, 191.228, 111.850, 90.00, 90.00, 90.00
R / Rfree (%)	22.7 / 26.9

The binding sites of Magnesium atom in the Crystal Structure of Ntrx From Brucella Abortus Processed with the Crystaldirect Automated Mounting and Cryo-Cooling Technology (pdb code 5m7o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Ntrx From Brucella Abortus Processed with the Crystaldirect Automated Mounting and Cryo-Cooling Technology, PDB code: 5m7o:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Ntrx From Brucella Abortus Processed with the Crystaldirect Automated Mounting and Cryo-Cooling Technology


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ntrx From Brucella Abortus Processed with the Crystaldirect Automated Mounting and Cryo-Cooling Technology within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:46.6 occ:1.00 OD1 A:ASP10 2.3 47.9 1.0 O A:HOH618 2.4 40.6 1.0 OD1 A:ASP9 2.4 43.4 1.0 OD2 A:ASP53 2.5 51.1 1.0 O A:HOH658 2.7 34.6 1.0 CG A:ASP9 3.3 43.9 1.0 CG A:ASP10 3.3 42.1 1.0 CG A:ASP53 3.3 47.9 1.0 OE2 A:GLU11 3.5 58.1 1.0 OD2 A:ASP9 3.5 44.1 1.0 OD1 A:ASP53 3.6 46.8 1.0 NZ A:LYS105 3.7 55.3 1.0 OD2 A:ASP10 3.7 43.8 1.0 CG A:GLU11 3.9 58.1 1.0 N A:GLU11 4.0 39.9 1.0 CB A:GLU11 4.0 50.4 1.0 CD A:GLU11 4.1 66.5 1.0 N A:ASP10 4.2 42.4 1.0 CB A:ASP53 4.5 47.0 1.0 CB A:ASP10 4.6 40.8 1.0 CA A:GLU11 4.6 45.2 1.0 C A:ASP10 4.6 39.2 1.0 CA A:ASP10 4.6 39.1 1.0 CB A:ASP9 4.7 38.4 1.0 CG1 A:ILE14 4.8 50.0 1.0 CE A:LYS105 4.8 56.7 1.0 C A:ASP9 4.9 39.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Ntrx From Brucella Abortus Processed with the Crystaldirect Automated Mounting and Cryo-Cooling Technology


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Ntrx From Brucella Abortus Processed with the Crystaldirect Automated Mounting and Cryo-Cooling Technology within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:54.5 occ:1.00 O B:HOH637 2.3 42.0 1.0 OD1 B:ASP10 2.4 68.2 1.0 O B:HOH606 2.5 43.1 1.0 OE2 B:GLU11 2.6 69.3 1.0 OD2 B:ASP53 2.8 64.9 1.0 OD1 B:ASP9 2.8 52.5 1.0 CD B:GLU11 3.2 71.8 1.0 CG B:GLU11 3.3 66.4 1.0 CG B:ASP10 3.5 65.6 1.0 NZ B:LYS105 3.6 58.7 1.0 CG B:ASP53 3.6 63.5 1.0 CG B:ASP9 3.7 56.1 1.0 CB B:GLU11 3.9 61.5 1.0 OD2 B:ASP9 4.0 55.1 1.0 OD1 B:ASP53 4.0 68.2 1.0 N B:GLU11 4.0 51.4 1.0 OD2 B:ASP10 4.1 68.8 1.0 N B:ASP10 4.1 56.2 1.0 OE1 B:GLU11 4.2 70.3 1.0 C B:ASP10 4.4 54.9 1.0 CA B:ASP10 4.5 58.1 1.0 CB B:ASP10 4.6 63.3 1.0 CA B:GLU11 4.6 57.1 1.0 CE B:LYS105 4.6 57.7 1.0 CB B:ASP53 4.8 60.1 1.0 CG1 B:ILE14 5.0 63.0 1.0

I.Fernandez, I.Cornaciu, M.D.Carrica, E.Uchikawa, G.Hoffmann, R.Sieira, J.A.Marquez, F.A.Goldbaum. Three-Dimensional Structure of Full-Length Ntrx, An Unusual Member of the Ntrc Family of Response Regulators. J. Mol. Biol. V. 429 1192 2017.
ISSN: ESSN 1089-8638
PubMed: 28088479
DOI: 10.1016/J.JMB.2016.12.022