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Magnesium in PDB 5m7q: Engineering the Thermostability of Nanobodies - NBD2

Protein crystallography data

The structure of Engineering the Thermostability of Nanobodies - NBD2, PDB code: 5m7q was solved by N.Soler, P.Kunz, S.Muyldermans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.69 / 1.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 49.058, 49.058, 225.735, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 24.9

Other elements in 5m7q:

The structure of Engineering the Thermostability of Nanobodies - NBD2 also contains other interesting chemical elements:

Chlorine (Cl) 7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Engineering the Thermostability of Nanobodies - NBD2 (pdb code 5m7q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Engineering the Thermostability of Nanobodies - NBD2, PDB code: 5m7q:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5m7q

Go back to Magnesium Binding Sites List in 5m7q
Magnesium binding site 1 out of 2 in the Engineering the Thermostability of Nanobodies - NBD2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Engineering the Thermostability of Nanobodies - NBD2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg206

b:47.7
occ:1.00
N B:GLY59 3.2 20.8 1.0
O B:HOH390 3.2 34.4 1.0
CA B:GLY59 3.9 23.3 1.0
C B:ALA58 4.2 20.1 1.0
CA B:ALA58 4.2 21.3 1.0
CD B:PRO60 4.4 25.9 1.0
CB B:ALA58 4.7 24.1 1.0
O B:HOH343 4.8 28.1 1.0

Magnesium binding site 2 out of 2 in 5m7q

Go back to Magnesium Binding Sites List in 5m7q
Magnesium binding site 2 out of 2 in the Engineering the Thermostability of Nanobodies - NBD2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Engineering the Thermostability of Nanobodies - NBD2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg205

b:48.2
occ:1.00
N A:GLY59 3.5 27.9 1.0
CA A:GLY59 4.1 25.1 1.0
C A:ALA58 4.5 30.4 1.0
CA A:ALA58 4.5 26.9 1.0
CD A:PRO60 4.7 28.3 1.0
CB A:ALA58 5.0 25.1 1.0

Reference:

P.Kunz, T.Flock, N.Soler, M.Zaiss, C.Vincke, Y.Sterckx, S.Muyldermans, D.Kastelic, J.Hoheisel. Engineering the Thermostability of Nanobodies To Be Published.
Page generated: Mon Dec 14 20:50:50 2020

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