Magnesium in PDB 5m8b: Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis

All present enzymatic activity of Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis:
3.2.1.55;

The structure of Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis, PDB code: 5m8b was solved by D.T.Logan, E.Nordberg Karlsson, J.A.Linares-Pasten, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.38 / 1.90
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	132.148, 132.148, 266.925, 90.00, 90.00, 120.00
R / Rfree (%)	14.6 / 17.4

The binding sites of Magnesium atom in the Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis (pdb code 5m8b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis, PDB code: 5m8b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:16.9 occ:1.00 O A:HOH572 2.0 13.1 1.0 OE2 A:GLU78 2.0 16.6 1.0 O A:HOH734 2.2 15.9 1.0 O A:HOH729 2.2 17.8 1.0 O A:HOH629 2.2 18.3 1.0 NE2 A:HIS266 2.3 17.0 1.0 CD A:GLU78 3.1 22.3 1.0 CD2 A:HIS266 3.3 17.2 1.0 CE1 A:HIS266 3.3 17.0 1.0 CG A:GLU78 3.6 14.4 1.0 O A:PRO204 3.9 18.0 1.0 O A:HOH534 4.0 20.0 1.0 O A:HOH748 4.1 29.8 1.0 O A:HOH593 4.1 17.0 1.0 OE1 A:GLU78 4.2 18.0 1.0 CG A:HIS266 4.4 16.2 1.0 ND1 A:HIS266 4.4 17.6 1.0 O A:ASP141 4.4 16.5 1.0 O A:HOH507 4.5 20.4 1.0 O A:ASN267 4.7 17.8 1.0 O A:ALA142 4.7 18.6 1.0 C A:ASP141 4.8 16.0 1.0 C A:GLY203 5.0 17.0 1.0 CA A:ASP141 5.0 13.9 1.0 CB A:THR143 5.0 17.0 1.0 CA A:GLY203 5.0 14.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:17.3 occ:1.00 OE2 B:GLU78 2.0 16.6 1.0 O B:HOH553 2.1 15.4 1.0 O B:HOH641 2.1 15.6 1.0 O B:HOH687 2.1 15.6 1.0 O B:HOH730 2.1 20.2 1.0 NE2 B:HIS266 2.3 16.4 1.0 CD B:GLU78 3.1 21.5 1.0 CD2 B:HIS266 3.2 18.2 1.0 CE1 B:HIS266 3.3 16.8 1.0 CG B:GLU78 3.6 14.3 1.0 O B:PRO204 4.0 17.4 1.0 O B:HOH718 4.0 28.6 1.0 O B:HOH528 4.0 18.2 1.0 O B:HOH521 4.2 15.7 1.0 OE1 B:GLU78 4.2 18.4 1.0 O B:ASP141 4.4 17.8 1.0 CG B:HIS266 4.4 17.1 1.0 ND1 B:HIS266 4.4 18.6 1.0 O B:ALA142 4.6 18.0 1.0 O B:HOH502 4.7 23.2 1.0 O B:ASN267 4.7 19.9 1.0 O B:ALA76 4.7 15.7 1.0 C B:ASP141 4.9 17.9 1.0 CB B:THR143 4.9 21.3 1.0 CB B:ALA76 4.9 15.5 1.0 CA B:GLY203 5.0 16.2 1.0 C B:GLY203 5.0 18.2 1.0

J.A.Linares-Pasten, P.Falck, K.Albasri, S.Kjellstrom, P.Adlercreutz, D.T.Logan, E.Nordberg Karlsson. Crystal Structure of Alpha-L-Arabinofuranosidase From Lactobacillus Brevis To Be Published.