Atomistry » Magnesium » PDB 5mdn-5mpq » 5mhk
Atomistry »
  Magnesium »
    PDB 5mdn-5mpq »
      5mhk »

Magnesium in PDB 5mhk: ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter

Protein crystallography data

The structure of ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter, PDB code: 5mhk was solved by R.B.Tunnicliffe, M.P.Lockhart-Cairns, C.Levy, P.Mould, T.A.Jowitt, H.Sito, C.Baldock, R.M.Sandri-Goldin, A.P.Golovanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.30 / 2.28
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.510, 100.730, 201.890, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 24.3

Other elements in 5mhk:

The structure of ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter (pdb code 5mhk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter, PDB code: 5mhk:

Magnesium binding site 1 out of 1 in 5mhk

Go back to Magnesium Binding Sites List in 5mhk
Magnesium binding site 1 out of 1 in the ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg101

b:50.0
occ:1.00
O3' H:DC1 2.8 75.6 1.0
OP1 H:DC2 2.9 79.1 1.0
C5' H:DC2 2.9 55.7 1.0
P H:DC2 3.2 91.9 1.0
O5' H:DC2 3.5 68.3 1.0
C3' H:DC1 3.9 59.4 1.0
C2' H:DC1 4.1 54.4 1.0
C4' H:DC2 4.1 51.3 1.0
CB A:ALA304 4.2 39.3 1.0
C4' H:DC1 4.4 54.3 1.0
CB B:ALA479 4.5 38.4 1.0
O4' H:DC2 4.6 51.3 1.0
OP2 H:DC2 4.7 68.4 1.0
O B:ALA479 4.8 51.0 1.0
O A:ALA301 4.9 74.0 1.0

Reference:

R.B.Tunnicliffe, M.P.Lockhart-Cairns, C.Levy, A.P.Mould, T.A.Jowitt, H.Sito, C.Baldock, R.M.Sandri-Goldin, A.P.Golovanov. The Herpes Viral Transcription Factor ICP4 Forms A Novel Dna Recognition Complex. Nucleic Acids Res. V. 45 8064 2017.
ISSN: ESSN 1362-4962
PubMed: 28505309
DOI: 10.1093/NAR/GKX419
Page generated: Mon Dec 14 20:51:40 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy