Magnesium in PDB 5mil: Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer.

The structure of Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer., PDB code: 5mil was solved by J.Donderis, A.Marina, J.R.Penades, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.84 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	33.470, 88.840, 54.150, 90.00, 91.68, 90.00
R / Rfree (%)	18.6 / 24.4

The binding sites of Magnesium atom in the Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer. (pdb code 5mil). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer., PDB code: 5mil:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:22.8 occ:1.00 OD2 A:ASP70 2.0 18.0 1.0 OE1 A:GLU67 2.0 20.5 1.0 OE1 A:GLU42 2.0 21.6 1.0 OE1 A:GLU39 2.2 16.8 1.0 O1B A:DUP201 2.2 18.4 1.0 O A:HOH307 2.3 26.8 1.0 CD A:GLU67 3.0 24.2 1.0 O A:HOH301 3.0 17.9 1.0 CD A:GLU42 3.0 25.3 1.0 CG A:ASP70 3.1 21.0 1.0 CD A:GLU39 3.2 16.5 1.0 OE2 A:GLU67 3.3 25.8 1.0 PB A:DUP201 3.4 20.7 1.0 OE2 A:GLU42 3.5 30.0 1.0 MG A:MG203 3.5 23.5 1.0 CB A:ASP70 3.5 18.9 1.0 O2B A:DUP201 3.6 21.2 1.0 OE2 A:GLU39 3.6 17.9 1.0 O2G A:DUP201 4.1 25.0 1.0 OD1 A:ASP70 4.2 21.1 1.0 CB A:GLU42 4.2 19.9 1.0 CG A:GLU42 4.2 21.4 1.0 CG A:GLU67 4.3 23.3 1.0 O3B A:DUP201 4.4 21.9 1.0 O A:HOH318 4.5 34.9 1.0 O1G A:DUP201 4.5 20.7 1.0 CG A:GLU39 4.6 17.5 1.0 CA A:GLU67 4.6 23.1 1.0 PG A:DUP201 4.6 20.6 1.0 N3A A:DUP201 4.6 16.2 1.0 CB A:GLU67 4.7 21.8 1.0 O A:HOH325 4.8 28.8 1.0 O A:HOH327 4.8 29.9 1.0 O1A A:DUP201 4.8 27.7 1.0 CB A:GLU39 4.9 14.4 1.0

Magnesium binding site 2 out of 4 in the Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:23.5 occ:1.00 O1G A:DUP201 2.0 20.7 1.0 O1A A:DUP201 2.0 27.7 1.0 O1B A:DUP201 2.1 18.4 1.0 OE2 A:GLU39 2.2 17.9 1.0 OE2 A:GLU42 2.2 30.0 1.0 O B:HOH307 2.3 19.6 1.0 PB A:DUP201 3.0 20.7 1.0 PG A:DUP201 3.0 20.6 1.0 CD A:GLU39 3.1 16.5 1.0 CD A:GLU42 3.1 25.3 1.0 O3B A:DUP201 3.3 21.9 1.0 OE1 A:GLU42 3.3 21.6 1.0 PA A:DUP201 3.3 29.3 1.0 OE1 A:GLU39 3.4 16.8 1.0 MG A:MG202 3.5 22.8 1.0 N3A A:DUP201 3.6 16.2 1.0 O2G A:DUP201 3.7 25.0 1.0 O A:HOH316 3.8 22.1 1.0 NZ B:LYS51 3.9 24.2 1.0 OD1 B:ASN45 4.1 18.3 1.0 ND2 B:ASN45 4.2 17.5 1.0 O3G A:DUP201 4.3 22.0 1.0 O2A A:DUP201 4.3 26.1 1.0 CE B:LYS51 4.4 27.9 1.0 O2B A:DUP201 4.4 21.2 1.0 O5' A:DUP201 4.4 23.1 1.0 CG A:GLU39 4.4 17.5 1.0 C5' A:DUP201 4.5 22.5 1.0 CG A:GLU42 4.5 21.4 1.0 O A:HOH301 4.5 17.9 1.0 CG B:ASN45 4.6 19.2 1.0 OD2 A:ASP70 4.6 18.0 1.0 O A:HOH307 4.7 26.8 1.0

Magnesium binding site 3 out of 4 in the Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:16.9 occ:1.00 OE1 B:GLU67 2.1 18.7 1.0 OD2 B:ASP70 2.1 22.3 1.0 O2B B:DUP201 2.1 20.9 1.0 OE1 B:GLU39 2.2 16.9 1.0 O B:HOH304 2.2 15.6 1.0 OE1 B:GLU42 2.2 15.3 1.0 O B:HOH301 3.1 10.3 1.0 CD B:GLU67 3.1 19.2 1.0 CD B:GLU42 3.1 18.6 1.0 CD B:GLU39 3.1 16.8 1.0 CG B:ASP70 3.1 20.5 1.0 PB B:DUP201 3.2 23.1 1.0 O1B B:DUP201 3.3 20.6 1.0 OE2 B:GLU39 3.4 14.9 1.0 MG B:MG203 3.4 17.7 1.0 OE2 B:GLU67 3.5 17.0 1.0 OE2 B:GLU42 3.5 16.9 1.0 CB B:ASP70 3.7 17.2 1.0 O3G B:DUP201 4.0 15.0 1.0 O3B B:DUP201 4.2 24.1 1.0 OD1 B:ASP70 4.2 21.3 1.0 CG B:GLU42 4.3 18.4 1.0 CB B:GLU42 4.3 18.6 1.0 O2G B:DUP201 4.4 21.6 1.0 PG B:DUP201 4.4 19.8 1.0 CG B:GLU67 4.5 15.3 1.0 NZ B:LYS149 4.5 25.1 1.0 CG B:GLU39 4.5 15.7 1.0 N3A B:DUP201 4.6 21.6 1.0 CA B:GLU67 4.6 18.7 1.0 O2A B:DUP201 4.7 20.5 1.0 O B:HOH311 4.8 23.5 1.0 O B:HOH318 4.8 23.9 1.0 CB B:GLU67 4.8 16.7 1.0 CB B:GLU39 5.0 12.4 1.0

Magnesium binding site 4 out of 4 in the Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Islands Transfer. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg203 b:17.7 occ:1.00 OE2 B:GLU39 2.0 14.9 1.0 OE2 B:GLU42 2.1 16.9 1.0 O2A B:DUP201 2.1 20.5 1.0 O A:HOH306 2.2 21.8 1.0 O2B B:DUP201 2.2 20.9 1.0 O2G B:DUP201 2.2 21.6 1.0 CD B:GLU39 2.9 16.8 1.0 CD B:GLU42 3.0 18.6 1.0 OE1 B:GLU39 3.3 16.9 1.0 OE1 B:GLU42 3.3 15.3 1.0 PB B:DUP201 3.3 23.1 1.0 PG B:DUP201 3.4 19.8 1.0 PA B:DUP201 3.4 23.3 1.0 MG B:MG202 3.4 16.9 1.0 O B:HOH321 3.6 18.3 1.0 O3B B:DUP201 3.7 24.1 1.0 N3A B:DUP201 3.8 21.6 1.0 NZ A:LYS51 4.0 23.8 1.0 O3G B:DUP201 4.0 15.0 1.0 ND2 A:ASN45 4.0 26.2 1.0 OD1 A:ASN45 4.2 18.8 1.0 CG B:GLU39 4.2 15.7 1.0 CE A:LYS51 4.4 20.9 1.0 O5' B:DUP201 4.4 24.4 1.0 C5' B:DUP201 4.4 20.3 1.0 CG B:GLU42 4.4 18.4 1.0 O1A B:DUP201 4.4 21.8 1.0 CG A:ASN45 4.5 21.5 1.0 O1B B:DUP201 4.6 20.6 1.0 O1G B:DUP201 4.6 21.1 1.0 O B:HOH301 4.6 10.3 1.0 O B:HOH304 4.7 15.6 1.0 OD2 B:ASP70 4.9 22.3 1.0 CG1 B:VAL38 4.9 16.9 1.0

J.Bowring, M.M.Neamah, J.Donderis, I.Mir-Sanchis, C.Alite, J.R.Ciges-Tomas, E.Maiques, I.Medmedov, A.Marina, J.R.Penades. Pirating Conserved Phage Mechanisms Promotes Promiscuous Staphylococcal Pathogenicity Island Transfer. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28826473
DOI: 10.7554/ELIFE.26487