Magnesium in PDB 5mm7: Ustilago Maydis Kinesin-5 Motor Domain with N-Terminal Extension in the Amppnp State Bound to Microtubules

The binding sites of Magnesium atom in the Ustilago Maydis Kinesin-5 Motor Domain with N-Terminal Extension in the Amppnp State Bound to Microtubules (pdb code 5mm7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ustilago Maydis Kinesin-5 Motor Domain with N-Terminal Extension in the Amppnp State Bound to Microtubules, PDB code: 5mm7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ustilago Maydis Kinesin-5 Motor Domain with N-Terminal Extension in the Amppnp State Bound to Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ustilago Maydis Kinesin-5 Motor Domain with N-Terminal Extension in the Amppnp State Bound to Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg500 b:0.2 occ:1.00 O2A K:ANP501 2.1 0.1 1.0 N K:HIS189 2.1 0.7 1.0 N K:THR188 2.2 0.6 1.0 C K:GLY186 2.3 0.8 1.0 O2B K:ANP501 2.5 0.1 1.0 CA K:GLY186 2.5 0.8 1.0 N K:LYS187 2.7 0.5 1.0 O K:GLY186 2.7 0.8 1.0 CA K:THR188 2.8 0.6 1.0 C K:THR188 2.9 0.6 1.0 C K:LYS187 2.9 0.5 1.0 CB K:THR188 3.2 0.6 1.0 CA K:HIS189 3.3 0.7 1.0 CA K:LYS187 3.3 0.5 1.0 PA K:ANP501 3.4 0.1 1.0 CB K:HIS189 3.4 0.7 1.0 N K:GLY186 3.5 0.8 1.0 PB K:ANP501 3.7 0.1 1.0 O K:LYS187 3.8 0.5 1.0 O5' K:ANP501 3.8 0.1 1.0 O3A K:ANP501 3.9 0.1 1.0 OG1 K:THR188 4.0 0.6 1.0 O K:THR188 4.1 0.6 1.0 O1B K:ANP501 4.1 0.1 1.0 N K:THR190 4.1 0.9 1.0 C K:HIS189 4.2 0.7 1.0 CB K:LYS187 4.5 0.5 1.0 O1A K:ANP501 4.5 0.1 1.0 CG2 K:THR188 4.5 0.6 1.0 C3' K:ANP501 4.6 0.1 1.0 C K:THR185 4.8 0.7 1.0 CG K:HIS189 4.9 0.7 1.0 O3' K:ANP501 4.9 0.1 1.0

Magnesium binding site 2 out of 2 in the Ustilago Maydis Kinesin-5 Motor Domain with N-Terminal Extension in the Amppnp State Bound to Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ustilago Maydis Kinesin-5 Motor Domain with N-Terminal Extension in the Amppnp State Bound to Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:0.7 occ:1.00 O2B A:GTP501 2.1 0.5 1.0 O3G A:GTP501 2.2 0.5 1.0 O3B A:GTP501 2.2 0.5 1.0 OG1 A:THR145 2.3 0.5 1.0 PG A:GTP501 2.4 0.5 1.0 PB A:GTP501 2.6 0.5 1.0 O2G A:GTP501 2.8 0.5 1.0 CB A:THR145 2.8 0.5 1.0 OD1 A:ASP98 3.0 1.0 1.0 OD2 A:ASP98 3.1 1.0 1.0 CG A:ASP98 3.4 1.0 1.0 O3A A:GTP501 3.7 0.5 1.0 O1B A:GTP501 3.8 0.5 1.0 N A:THR145 3.8 0.5 1.0 O1G A:GTP501 3.9 0.5 1.0 CA A:THR145 3.9 0.5 1.0 CG2 A:THR145 3.9 0.5 1.0 N A:GLN11 4.4 0.6 1.0 CA A:GLY10 4.7 0.5 1.0 NZ B:LYS254 4.8 0.1 1.0 CB A:ASP98 4.9 1.0 1.0 CB A:GLN11 4.9 0.6 1.0 C A:THR145 4.9 0.5 1.0 N A:GLY146 4.9 0.9 1.0 N A:GLY144 4.9 0.5 1.0 C A:GLY144 5.0 0.5 1.0

O.Von Loeffelholz, C.Ann Moores. Cryo-Em Structure of the Ustilago Maydis Kinesin-5 Motor Domain Bound to Microtubules. J.Struct.Biol. 2019.
ISSN: ESSN 1095-8657
PubMed: 31288039
DOI: 10.1016/J.JSB.2019.07.003