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Magnesium in PDB 5ms0: Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em

Enzymatic activity of Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em

All present enzymatic activity of Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em:
2.7.7.6;

Other elements in 5ms0:

The structure of Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em (pdb code 5ms0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em, PDB code: 5ms0:

Magnesium binding site 1 out of 1 in 5ms0

Go back to Magnesium Binding Sites List in 5ms0
Magnesium binding site 1 out of 1 in the Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1501

b:25.0
occ:1.00
 C4' H:C20 2.8 0.1 1.0
C5' H:C20 3.2 0.1 1.0
N D:ASP464 3.3 0.0 1.0
CB D:ASP464 3.3 0.0 1.0
O4' H:C20 3.5 0.1 1.0
O D:ASP460 3.6 0.0 1.0
CA D:ASP464 3.8 0.0 1.0
C3' H:C20 3.9 0.1 1.0
C D:ASP460 3.9 0.0 1.0
O3' H:C20 3.9 0.1 1.0
N D:ASP462 4.0 0.0 1.0
N D:GLY463 4.0 0.0 1.0
O2' H:C20 4.1 0.1 1.0
N D:ASP460 4.1 0.0 1.0
C D:GLY463 4.1 0.0 1.0
C D:ASP462 4.3 0.0 1.0
CA D:ASP460 4.4 0.0 1.0
CB D:ASP460 4.4 0.0 1.0
C1' H:C20 4.4 0.1 1.0
C2' H:C20 4.4 0.1 1.0
N D:PHE461 4.4 0.0 1.0
CA D:GLY463 4.5 0.0 1.0
CA D:ASP462 4.5 0.0 1.0
O5' H:C20 4.6 0.1 1.0
CB D:ASP462 4.8 0.0 1.0
O D:ASP462 4.9 0.0 1.0
CA D:PHE461 4.9 0.0 1.0
C D:PHE461 4.9 0.0 1.0

Reference:

N.Said, F.Krupp, E.Anedchenko, K.F.Santos, O.Dybkov, Y.H.Huang, C.T.Lee, B.Loll, E.Behrmann, J.Burger, T.Mielke, J.Loerke, H.Urlaub, C.M.T.Spahn, G.Weber, M.C.Wahl. Structural Basis For Lambda N-Dependent Processive Transcription Antitermination. Nat Microbiol V. 2 17062 2017.
ISSN: ESSN 2058-5276
PubMed: 28452979
DOI: 10.1038/NMICROBIOL.2017.62
Page generated: Tue Aug 12 15:32:03 2025

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