Magnesium in PDB 5mtv: Active Structure of EHD4 Complexed with Atp-Gamma-S

The structure of Active Structure of EHD4 Complexed with Atp-Gamma-S, PDB code: 5mtv was solved by A.A.Melo, O.Daumke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.50 / 2.79
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	199.973, 199.973, 41.537, 90.00, 90.00, 90.00
R / Rfree (%)	22.7 / 24.3

The binding sites of Magnesium atom in the Active Structure of EHD4 Complexed with Atp-Gamma-S (pdb code 5mtv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Active Structure of EHD4 Complexed with Atp-Gamma-S, PDB code: 5mtv:

Magnesium binding site 1 out of 1 in the Active Structure of EHD4 Complexed with Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Active Structure of EHD4 Complexed with Atp-Gamma-S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:0.1 occ:1.00 HB A:THR75 1.2 0.8 1.0 H A:THR75 1.8 95.8 1.0 HOG2 A:AGS1000 1.8 0.2 1.0 CB A:THR75 1.8 0.1 1.0 N A:THR75 1.9 79.8 1.0 CA A:THR75 2.0 57.1 1.0 HA A:THR75 2.1 68.5 1.0 OD2 A:ASP156 2.3 52.2 1.0 O2G A:AGS1000 2.3 0.9 1.0 OG1 A:THR75 2.6 0.9 1.0 O3B A:AGS1000 2.8 0.8 1.0 PG A:AGS1000 2.9 0.4 1.0 C A:LYS74 3.0 0.8 1.0 HB2 A:LYS74 3.0 80.1 1.0 CG2 A:THR75 3.1 0.6 1.0 HG22 A:THR75 3.2 0.7 1.0 CG A:ASP156 3.3 55.1 1.0 C A:THR75 3.5 53.4 1.0 HB3 A:LYS74 3.5 80.1 1.0 HG21 A:THR75 3.5 0.7 1.0 CB A:LYS74 3.6 66.8 1.0 OD1 A:ASP156 3.6 56.2 1.0 S1G A:AGS1000 3.7 0.5 1.0 O A:LYS74 3.7 0.0 1.0 HG23 A:THR75 3.8 0.7 1.0 CA A:LYS74 3.8 0.8 1.0 H A:THR76 4.0 0.2 1.0 HD12 A:ILE78 4.1 54.2 1.0 N A:THR76 4.2 0.7 1.0 PB A:AGS1000 4.2 0.9 1.0 N A:LYS74 4.3 75.7 1.0 O A:THR75 4.3 48.5 1.0 H A:LYS74 4.4 90.9 1.0 O3G A:AGS1000 4.4 0.9 1.0 HZ2 A:LYS74 4.5 60.3 1.0 O1B A:AGS1000 4.6 0.9 1.0 HA A:LYS74 4.6 0.9 1.0 HZ3 A:LYS74 4.6 60.3 1.0 CB A:ASP156 4.7 57.9 1.0 HZ A:PHE86 4.7 62.6 1.0 O1A A:AGS1000 4.7 0.6 1.0 O2A A:AGS1000 4.7 0.2 1.0 H21 A:AGS1000 4.7 0.9 1.0 HB2 A:ASP156 4.8 69.5 1.0 HB3 A:ASP156 4.9 69.5 1.0 CD1 A:ILE78 5.0 45.2 1.0

A.A.Melo, B.G.Hegde, C.Shah, E.Larsson, J.M.Isas, S.Kunz, R.Lundmark, R.Langen, O.Daumke. Structural Insights Into the Activation Mechanism of Dynamin-Like Ehd Atpases. Proc. Natl. Acad. Sci. V. 114 5629 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28228524
DOI: 10.1073/PNAS.1614075114