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Magnesium in PDB 5mv8: Structure of Human Myosin 7B C-Terminal MYTH4-Ferm Domain in Complex with Harmonin-A PDZ3 Domain

Protein crystallography data

The structure of Structure of Human Myosin 7B C-Terminal MYTH4-Ferm Domain in Complex with Harmonin-A PDZ3 Domain, PDB code: 5mv8 was solved by I.Yu, Y.Sourigues, M.A.Titus, A.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.33 / 1.88
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 69.620, 42.560, 118.170, 90.00, 98.02, 90.00
R / Rfree (%) 19 / 21.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Human Myosin 7B C-Terminal MYTH4-Ferm Domain in Complex with Harmonin-A PDZ3 Domain (pdb code 5mv8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Human Myosin 7B C-Terminal MYTH4-Ferm Domain in Complex with Harmonin-A PDZ3 Domain, PDB code: 5mv8:

Magnesium binding site 1 out of 1 in 5mv8

Go back to Magnesium Binding Sites List in 5mv8
Magnesium binding site 1 out of 1 in the Structure of Human Myosin 7B C-Terminal MYTH4-Ferm Domain in Complex with Harmonin-A PDZ3 Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Human Myosin 7B C-Terminal MYTH4-Ferm Domain in Complex with Harmonin-A PDZ3 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2206

b:73.5
occ:1.00
O A:HOH2423 2.4 39.5 1.0
O A:HOH2361 2.6 52.4 1.0
CE A:MET1969 4.2 36.6 0.6
CB A:MET1969 4.7 29.3 0.6
CB A:MET1969 4.7 24.8 0.4
O A:LEU1968 4.7 30.5 1.0

Reference:

I.M.Yu, V.J.Planelles-Herrero, Y.Sourigues, D.Moussaoui, H.Sirkia, C.Kikuti, D.Stroebel, M.A.Titus, A.Houdusse. Myosin 7 and Its Adaptors Link Cadherins to Actin. Nat Commun V. 8 15864 2017.
ISSN: ESSN 2041-1723
PubMed: 28660889
DOI: 10.1038/NCOMMS15864
Page generated: Mon Dec 14 20:54:21 2020

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