Magnesium in PDB 5mvq: Crystal Structure of An Unmodified, Self-Complementary Dodecamer.

The structure of Crystal Structure of An Unmodified, Self-Complementary Dodecamer., PDB code: 5mvq was solved by J.S.Hardwick, D.Ptchelkine, S.E.V.Phillips, T.Brown, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.74 / 1.60
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	42.425, 42.425, 61.697, 90.00, 90.00, 120.00
R / Rfree (%)	17.9 / 19.4

The binding sites of Magnesium atom in the Crystal Structure of An Unmodified, Self-Complementary Dodecamer. (pdb code 5mvq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Unmodified, Self-Complementary Dodecamer., PDB code: 5mvq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of An Unmodified, Self-Complementary Dodecamer.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Unmodified, Self-Complementary Dodecamer. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:31.9 occ:1.00 O A:HOH233 2.0 34.3 0.9 O A:HOH235 2.2 30.9 1.0 O A:HOH220 2.4 28.9 0.8 O A:HOH206 2.5 29.5 0.8 O A:HOH205 3.6 34.6 1.0 O A:HOH232 3.8 44.9 1.0 O B:HOH219 4.0 39.5 1.0 N4 A:DC4 4.2 25.9 1.0 O A:HOH234 4.4 30.8 0.7 O A:HOH217 4.4 32.5 1.0 O6 A:DG5 4.4 26.7 1.0 O A:HOH221 4.4 28.9 0.9 O A:HOH222 4.6 26.3 0.9 O B:HOH225 4.6 33.0 0.9 N7 A:DG5 4.8 26.1 1.0 C5 A:DC4 4.8 22.7 1.0 C4 A:DC4 4.9 23.8 1.0 O A:HOH229 5.0 34.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of An Unmodified, Self-Complementary Dodecamer.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Unmodified, Self-Complementary Dodecamer. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:32.6 occ:1.00 O B:HOH213 2.0 28.3 0.9 O A:HOH240 2.0 43.3 0.8 O B:HOH203 2.1 27.1 1.0 O B:HOH235 2.1 39.2 0.8 O B:HOH204 2.2 24.8 0.9 O A:HOH225 2.2 33.2 0.9 O6 B:DG9 4.2 23.3 1.0 N7 B:DG9 4.2 23.1 1.0 O B:HOH223 4.2 34.0 1.0 O B:HOH222 4.3 40.0 1.0 O4 B:DT10 4.4 25.1 1.0 O4 A:DT2 4.5 24.6 1.0 O A:HOH234 4.5 30.8 0.7 N6 B:DA11 4.7 25.9 1.0 N4 B:DC8 4.8 25.6 1.0 C6 B:DG9 4.8 24.0 1.0 C5 B:DG9 4.9 23.0 1.0

J.S.Hardwick, D.Ptchelkine, A.H.El-Sagheer, I.Tear, D.Singleton, S.E.V.Phillips, A.N.Lane, T.Brown. 5-Formylcytosine Does Not Change the Global Structure of Dna. Nat. Struct. Mol. Biol. V. 24 544 2017.
ISSN: ESSN 1545-9985
PubMed: 28504696
DOI: 10.1038/NSMB.3411