Magnesium in PDB 5mvr: Crystal Structure of Bacillus Subtilus Ydib

The structure of Crystal Structure of Bacillus Subtilus Ydib, PDB code: 5mvr was solved by J.-M.Jault, N.Aghajari, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.84 / 1.76
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	68.590, 59.820, 39.340, 90.00, 110.09, 90.00
R / Rfree (%)	18 / 20.9

The binding sites of Magnesium atom in the Crystal Structure of Bacillus Subtilus Ydib (pdb code 5mvr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Bacillus Subtilus Ydib, PDB code: 5mvr:

Magnesium binding site 1 out of 1 in the Crystal Structure of Bacillus Subtilus Ydib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bacillus Subtilus Ydib within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:47.3 occ:1.00 O1B A:ADP201 2.6 38.8 1.0 OE1 A:GLU106 2.6 43.1 1.0 OG1 A:THR42 2.9 43.0 1.0 CD A:GLU106 3.5 41.2 1.0 O A:HOH333 3.6 60.8 1.0 PB A:ADP201 3.6 36.2 1.0 OE2 A:GLU106 3.7 42.6 1.0 O A:HOH307 3.7 65.2 1.0 O3B A:ADP201 3.8 38.8 1.0 N A:THR42 4.0 32.0 1.0 CE A:LYS41 4.0 36.1 1.0 O A:HOH350 4.0 62.6 1.0 OD2 A:ASP80 4.0 81.7 1.0 CB A:THR42 4.2 36.2 1.0 CB A:LYS41 4.3 26.2 1.0 O2B A:ADP201 4.4 32.4 1.0 CA A:THR42 4.5 29.7 1.0 NZ A:LYS41 4.5 32.0 1.0 C A:LYS41 4.7 28.8 1.0 O3A A:ADP201 4.9 37.5 1.0 CG A:GLU106 4.9 35.0 1.0 CD A:LYS41 4.9 34.1 1.0 O1A A:ADP201 5.0 34.1 1.0

H.A.Nguyen, T.El Khoury, S.Guiral, M.H.Laaberki, M.P.Candusso, F.Galisson, A.E.Foucher, S.Kesraoui, L.Ballut, S.Vallet, C.Orelle, L.Zucchini, J.Martin, A.Page, J.Attieh, N.Aghajari, C.Grangeasse, J.M.Jault. Expanding the Kinome World: A New Protein Kinase Family Widely Conserved in Bacteria. J. Mol. Biol. V. 429 3056 2017.
ISSN: ESSN 1089-8638
PubMed: 28890133
DOI: 10.1016/J.JMB.2017.08.016