Magnesium in PDB 5mx2: Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Enzymatic activity of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
All present enzymatic activity of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution:
1.10.3.9;
Protein crystallography data
The structure of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution, PDB code: 5mx2
was solved by
M.Zhang,
M.Bommer,
R.Chatterjee,
R.Hussain,
J.Kern,
J.Yano,
H.Dau,
H.Dobbek,
A.Zouni,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.65 /
2.20
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
116.326,
219.617,
304.043,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.1 /
26
|
Other elements in 5mx2:
The structure of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 1 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:17.9
occ:1.00
|
MG
|
A:CLA403
|
0.0
|
17.9
|
1.0
|
NB
|
A:CLA403
|
1.9
|
18.9
|
1.0
|
ND
|
A:CLA403
|
2.0
|
16.5
|
1.0
|
NC
|
A:CLA403
|
2.0
|
18.2
|
1.0
|
NA
|
A:CLA403
|
2.0
|
16.1
|
1.0
|
NE2
|
A:HIS198
|
2.2
|
19.6
|
1.0
|
C4D
|
A:CLA403
|
2.9
|
18.8
|
1.0
|
C1C
|
A:CLA403
|
3.0
|
17.0
|
1.0
|
C1A
|
A:CLA403
|
3.0
|
16.8
|
1.0
|
C4B
|
A:CLA403
|
3.0
|
20.3
|
1.0
|
C1B
|
A:CLA403
|
3.0
|
21.6
|
1.0
|
CE1
|
A:HIS198
|
3.0
|
22.4
|
1.0
|
C4A
|
A:CLA403
|
3.0
|
15.9
|
1.0
|
C1D
|
A:CLA403
|
3.1
|
16.4
|
1.0
|
C4C
|
A:CLA403
|
3.1
|
20.9
|
1.0
|
CD2
|
A:HIS198
|
3.2
|
23.0
|
1.0
|
CHC
|
A:CLA403
|
3.4
|
18.7
|
1.0
|
CHA
|
A:CLA403
|
3.4
|
18.4
|
1.0
|
CHB
|
A:CLA403
|
3.4
|
17.4
|
1.0
|
CHD
|
A:CLA403
|
3.6
|
14.2
|
1.0
|
CE
|
A:MET183
|
4.1
|
16.8
|
1.0
|
C3D
|
A:CLA403
|
4.2
|
16.3
|
1.0
|
ND1
|
A:HIS198
|
4.2
|
22.9
|
1.0
|
C3B
|
A:CLA403
|
4.2
|
20.4
|
1.0
|
C2B
|
A:CLA403
|
4.2
|
18.9
|
1.0
|
C2C
|
A:CLA403
|
4.2
|
17.5
|
1.0
|
C2D
|
A:CLA403
|
4.2
|
15.0
|
1.0
|
CG
|
A:HIS198
|
4.3
|
24.2
|
1.0
|
C3A
|
A:CLA403
|
4.3
|
17.0
|
1.0
|
C3C
|
A:CLA403
|
4.3
|
17.6
|
1.0
|
C2A
|
A:CLA403
|
4.3
|
18.0
|
1.0
|
CAB
|
D:CLA402
|
4.5
|
15.6
|
1.0
|
CBD
|
A:CLA403
|
4.9
|
20.8
|
1.0
|
|
Magnesium binding site 2 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 2 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:27.8
occ:1.00
|
MG
|
A:CLA404
|
0.0
|
27.8
|
1.0
|
ND
|
A:CLA404
|
1.9
|
26.0
|
1.0
|
NB
|
A:CLA404
|
1.9
|
21.1
|
1.0
|
NC
|
A:CLA404
|
2.0
|
21.7
|
1.0
|
NA
|
A:CLA404
|
2.0
|
22.8
|
1.0
|
O
|
A:HOH531
|
2.1
|
23.4
|
1.0
|
C4D
|
A:CLA404
|
2.9
|
24.2
|
1.0
|
C1C
|
A:CLA404
|
3.0
|
20.2
|
1.0
|
C4B
|
A:CLA404
|
3.0
|
19.3
|
1.0
|
C1A
|
A:CLA404
|
3.0
|
21.8
|
1.0
|
C1B
|
A:CLA404
|
3.1
|
23.9
|
1.0
|
C1D
|
A:CLA404
|
3.1
|
23.3
|
1.0
|
C4A
|
A:CLA404
|
3.1
|
22.4
|
1.0
|
C4C
|
A:CLA404
|
3.2
|
19.3
|
1.0
|
CHC
|
A:CLA404
|
3.4
|
20.8
|
1.0
|
CHA
|
A:CLA404
|
3.4
|
23.8
|
1.0
|
CHB
|
A:CLA404
|
3.4
|
20.4
|
1.0
|
CHD
|
A:CLA404
|
3.5
|
22.0
|
1.0
|
CBB
|
A:PHO405
|
4.1
|
19.4
|
1.0
|
C3D
|
A:CLA404
|
4.1
|
21.2
|
1.0
|
C2D
|
A:CLA404
|
4.2
|
22.7
|
1.0
|
C3B
|
A:CLA404
|
4.2
|
22.7
|
1.0
|
C2B
|
A:CLA404
|
4.2
|
19.3
|
1.0
|
C2C
|
A:CLA404
|
4.3
|
19.4
|
1.0
|
C3C
|
A:CLA404
|
4.4
|
19.4
|
1.0
|
C2A
|
A:CLA404
|
4.4
|
25.1
|
1.0
|
C3A
|
A:CLA404
|
4.4
|
22.9
|
1.0
|
O
|
D:HOH559
|
4.4
|
23.8
|
1.0
|
CG2
|
D:ILE178
|
4.7
|
23.0
|
1.0
|
CBA
|
A:CLA404
|
4.7
|
22.9
|
1.0
|
CBD
|
A:CLA404
|
4.9
|
21.4
|
1.0
|
CG1
|
D:ILE178
|
5.0
|
20.0
|
1.0
|
|
Magnesium binding site 3 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 3 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:16.4
occ:1.00
|
MG
|
A:CLA406
|
0.0
|
16.4
|
1.0
|
NB
|
A:CLA406
|
1.9
|
11.6
|
1.0
|
ND
|
A:CLA406
|
1.9
|
13.7
|
1.0
|
NC
|
A:CLA406
|
1.9
|
12.8
|
1.0
|
NA
|
A:CLA406
|
1.9
|
14.4
|
1.0
|
NE2
|
A:HIS118
|
2.2
|
19.3
|
1.0
|
C4D
|
A:CLA406
|
2.8
|
16.2
|
1.0
|
C1C
|
A:CLA406
|
2.9
|
13.3
|
1.0
|
C4B
|
A:CLA406
|
2.9
|
11.8
|
1.0
|
C1B
|
A:CLA406
|
2.9
|
15.0
|
1.0
|
C1A
|
A:CLA406
|
3.0
|
17.8
|
1.0
|
C4A
|
A:CLA406
|
3.0
|
17.5
|
1.0
|
CE1
|
A:HIS118
|
3.0
|
17.3
|
1.0
|
C1D
|
A:CLA406
|
3.1
|
14.0
|
1.0
|
C4C
|
A:CLA406
|
3.1
|
12.9
|
1.0
|
CHA
|
A:CLA406
|
3.3
|
17.8
|
1.0
|
CHB
|
A:CLA406
|
3.3
|
17.3
|
1.0
|
CD2
|
A:HIS118
|
3.3
|
16.5
|
1.0
|
CHC
|
A:CLA406
|
3.3
|
11.8
|
1.0
|
CHD
|
A:CLA406
|
3.5
|
13.0
|
1.0
|
CG1
|
I:VAL8
|
4.1
|
19.3
|
1.0
|
C3D
|
A:CLA406
|
4.1
|
15.4
|
1.0
|
C2B
|
A:CLA406
|
4.1
|
13.6
|
1.0
|
C3B
|
A:CLA406
|
4.1
|
15.3
|
1.0
|
C2D
|
A:CLA406
|
4.2
|
13.2
|
1.0
|
ND1
|
A:HIS118
|
4.2
|
22.1
|
1.0
|
C2C
|
A:CLA406
|
4.2
|
13.6
|
1.0
|
C3C
|
A:CLA406
|
4.2
|
13.6
|
1.0
|
C3A
|
A:CLA406
|
4.2
|
20.7
|
1.0
|
C2A
|
A:CLA406
|
4.3
|
20.6
|
1.0
|
CG
|
A:HIS118
|
4.4
|
19.2
|
1.0
|
CG2
|
I:VAL12
|
4.5
|
22.2
|
1.0
|
CBD
|
A:CLA406
|
4.8
|
21.8
|
1.0
|
CMA
|
A:CLA406
|
5.0
|
22.4
|
1.0
|
|
Magnesium binding site 4 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 4 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg412
b:19.7
occ:1.00
|
MG
|
A:CLA412
|
0.0
|
19.7
|
1.0
|
NB
|
A:CLA412
|
1.9
|
19.8
|
1.0
|
ND
|
A:CLA412
|
1.9
|
20.7
|
1.0
|
NC
|
A:CLA412
|
1.9
|
19.8
|
1.0
|
NA
|
A:CLA412
|
2.0
|
23.4
|
1.0
|
O
|
A:HOH540
|
2.1
|
20.9
|
1.0
|
C4D
|
A:CLA412
|
2.9
|
20.1
|
1.0
|
C1C
|
A:CLA412
|
2.9
|
25.9
|
1.0
|
C4B
|
A:CLA412
|
3.0
|
18.9
|
1.0
|
C1B
|
A:CLA412
|
3.0
|
23.0
|
1.0
|
C1A
|
A:CLA412
|
3.0
|
18.3
|
1.0
|
C4A
|
A:CLA412
|
3.0
|
23.2
|
1.0
|
C4C
|
A:CLA412
|
3.1
|
20.4
|
1.0
|
C1D
|
A:CLA412
|
3.1
|
21.4
|
1.0
|
CHC
|
A:CLA412
|
3.3
|
19.4
|
1.0
|
CHB
|
A:CLA412
|
3.4
|
19.4
|
1.0
|
CHA
|
A:CLA412
|
3.4
|
19.4
|
1.0
|
CHD
|
A:CLA412
|
3.6
|
20.7
|
1.0
|
O
|
A:HOH561
|
4.0
|
17.4
|
1.0
|
C3D
|
A:CLA412
|
4.1
|
17.0
|
1.0
|
C3B
|
A:CLA412
|
4.2
|
23.2
|
1.0
|
C2B
|
A:CLA412
|
4.2
|
21.7
|
1.0
|
CBB
|
D:PHO401
|
4.2
|
19.7
|
1.0
|
C2C
|
A:CLA412
|
4.2
|
25.8
|
1.0
|
C2D
|
A:CLA412
|
4.2
|
18.7
|
1.0
|
C3C
|
A:CLA412
|
4.3
|
19.5
|
1.0
|
C3A
|
A:CLA412
|
4.3
|
18.2
|
1.0
|
C2A
|
A:CLA412
|
4.3
|
19.2
|
1.0
|
CG2
|
A:THR179
|
4.5
|
19.2
|
1.0
|
CBA
|
A:CLA412
|
4.6
|
21.3
|
1.0
|
C19
|
D:PHO401
|
4.8
|
23.2
|
1.0
|
OG1
|
A:THR179
|
4.8
|
15.9
|
1.0
|
CBD
|
A:CLA412
|
4.9
|
18.8
|
1.0
|
|
Magnesium binding site 5 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 5 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:25.9
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
25.9
|
1.0
|
NB
|
B:CLA601
|
1.9
|
26.8
|
1.0
|
ND
|
B:CLA601
|
1.9
|
24.8
|
1.0
|
NC
|
B:CLA601
|
1.9
|
22.8
|
1.0
|
NA
|
B:CLA601
|
2.0
|
23.3
|
1.0
|
ND1
|
B:HIS201
|
2.1
|
21.7
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
25.5
|
1.0
|
CE1
|
B:HIS201
|
3.0
|
19.6
|
1.0
|
C1C
|
B:CLA601
|
3.0
|
24.4
|
1.0
|
C4B
|
B:CLA601
|
3.0
|
22.0
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
26.6
|
1.0
|
C1A
|
B:CLA601
|
3.0
|
24.4
|
1.0
|
C4A
|
B:CLA601
|
3.1
|
24.6
|
1.0
|
C4C
|
B:CLA601
|
3.1
|
22.2
|
1.0
|
C1D
|
B:CLA601
|
3.1
|
24.1
|
1.0
|
CG
|
B:HIS201
|
3.2
|
23.0
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
22.7
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
25.0
|
1.0
|
CHA
|
B:CLA601
|
3.4
|
25.9
|
1.0
|
CHD
|
B:CLA601
|
3.5
|
22.6
|
1.0
|
CB
|
B:HIS201
|
3.7
|
23.5
|
1.0
|
NE2
|
B:HIS201
|
4.1
|
19.2
|
1.0
|
C3D
|
B:CLA601
|
4.1
|
23.4
|
1.0
|
C2C
|
B:CLA601
|
4.2
|
25.4
|
1.0
|
C3B
|
B:CLA601
|
4.2
|
25.4
|
1.0
|
C2B
|
B:CLA601
|
4.2
|
28.5
|
1.0
|
C2D
|
B:CLA601
|
4.2
|
21.2
|
1.0
|
CD2
|
B:HIS201
|
4.3
|
17.6
|
1.0
|
C3C
|
B:CLA601
|
4.3
|
22.8
|
1.0
|
CZ
|
H:PHE41
|
4.3
|
39.0
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
27.2
|
1.0
|
C2A
|
B:CLA601
|
4.4
|
25.4
|
1.0
|
CA
|
B:HIS201
|
4.4
|
22.6
|
1.0
|
CE1
|
B:PHE190
|
4.8
|
28.0
|
1.0
|
CD1
|
H:ILE45
|
4.8
|
29.2
|
1.0
|
CE2
|
H:PHE41
|
4.8
|
38.4
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
25.6
|
1.0
|
O
|
B:HIS201
|
5.0
|
21.6
|
1.0
|
|
Magnesium binding site 6 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 6 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:23.1
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
23.1
|
1.0
|
ND
|
B:CLA602
|
1.9
|
20.3
|
1.0
|
NB
|
B:CLA602
|
1.9
|
18.6
|
1.0
|
NC
|
B:CLA602
|
2.0
|
19.9
|
1.0
|
NA
|
B:CLA602
|
2.0
|
20.3
|
1.0
|
NE2
|
B:HIS202
|
2.2
|
22.2
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
19.0
|
1.0
|
C1C
|
B:CLA602
|
3.0
|
19.6
|
1.0
|
C4B
|
B:CLA602
|
3.0
|
23.4
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
19.1
|
1.0
|
C1A
|
B:CLA602
|
3.0
|
20.3
|
1.0
|
C1D
|
B:CLA602
|
3.1
|
23.0
|
1.0
|
CD2
|
B:HIS202
|
3.1
|
23.1
|
1.0
|
C4A
|
B:CLA602
|
3.1
|
20.0
|
1.0
|
C4C
|
B:CLA602
|
3.1
|
18.7
|
1.0
|
CE1
|
B:HIS202
|
3.2
|
21.3
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
20.9
|
1.0
|
CHA
|
B:CLA602
|
3.4
|
18.4
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
19.6
|
1.0
|
CHD
|
B:CLA602
|
3.5
|
19.9
|
1.0
|
C3D
|
B:CLA602
|
4.1
|
18.1
|
1.0
|
C2B
|
B:CLA602
|
4.2
|
18.3
|
1.0
|
C3B
|
B:CLA602
|
4.2
|
21.1
|
1.0
|
C2D
|
B:CLA602
|
4.2
|
20.5
|
1.0
|
C2C
|
B:CLA602
|
4.2
|
21.6
|
1.0
|
CG
|
B:HIS202
|
4.3
|
24.2
|
1.0
|
ND1
|
B:HIS202
|
4.3
|
23.7
|
1.0
|
C3C
|
B:CLA602
|
4.3
|
24.2
|
1.0
|
C2A
|
B:CLA602
|
4.4
|
20.1
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
21.3
|
1.0
|
C6
|
B:CLA604
|
4.5
|
21.3
|
1.0
|
C4
|
B:CLA604
|
4.7
|
24.1
|
1.0
|
C9
|
B:CLA604
|
4.7
|
23.0
|
1.0
|
NE2
|
B:HIS201
|
4.8
|
19.2
|
1.0
|
CD2
|
B:HIS201
|
4.9
|
17.6
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
19.0
|
1.0
|
CBA
|
B:CLA602
|
5.0
|
21.3
|
1.0
|
|
Magnesium binding site 7 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 7 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:20.4
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
20.4
|
1.0
|
NB
|
B:CLA603
|
1.9
|
18.9
|
1.0
|
ND
|
B:CLA603
|
1.9
|
20.2
|
1.0
|
NC
|
B:CLA603
|
2.0
|
21.7
|
1.0
|
NA
|
B:CLA603
|
2.0
|
24.6
|
1.0
|
NE2
|
B:HIS455
|
2.1
|
21.9
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
21.8
|
1.0
|
C1C
|
B:CLA603
|
3.0
|
21.3
|
1.0
|
C4B
|
B:CLA603
|
3.0
|
20.5
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
18.2
|
1.0
|
CD2
|
B:HIS455
|
3.1
|
18.6
|
1.0
|
C1A
|
B:CLA603
|
3.1
|
20.7
|
1.0
|
C4A
|
B:CLA603
|
3.1
|
21.0
|
1.0
|
C1D
|
B:CLA603
|
3.1
|
20.9
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
19.4
|
1.0
|
CE1
|
B:HIS455
|
3.2
|
19.9
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
20.1
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
20.7
|
1.0
|
CHA
|
B:CLA603
|
3.4
|
21.1
|
1.0
|
CHD
|
B:CLA603
|
3.6
|
18.9
|
1.0
|
C3D
|
B:CLA603
|
4.1
|
23.6
|
1.0
|
C3B
|
B:CLA603
|
4.2
|
22.4
|
1.0
|
C2B
|
B:CLA603
|
4.2
|
19.0
|
1.0
|
C2D
|
B:CLA603
|
4.2
|
22.1
|
1.0
|
C2C
|
B:CLA603
|
4.2
|
20.8
|
1.0
|
CG
|
B:HIS455
|
4.2
|
17.5
|
1.0
|
ND1
|
B:HIS455
|
4.2
|
18.4
|
1.0
|
C3C
|
B:CLA603
|
4.3
|
18.6
|
1.0
|
C14
|
B:CLA611
|
4.4
|
21.8
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
20.2
|
1.0
|
C2A
|
B:CLA603
|
4.4
|
23.1
|
1.0
|
C15
|
B:CLA611
|
4.8
|
23.5
|
1.0
|
C13
|
B:CLA611
|
4.9
|
19.9
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
24.2
|
1.0
|
|
Magnesium binding site 8 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 8 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:16.9
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
16.9
|
1.0
|
NC
|
B:CLA604
|
1.9
|
18.2
|
1.0
|
ND
|
B:CLA604
|
2.0
|
23.1
|
1.0
|
NA
|
B:CLA604
|
2.0
|
19.8
|
1.0
|
NB
|
B:CLA604
|
2.0
|
20.6
|
1.0
|
NE2
|
B:HIS100
|
2.2
|
21.5
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
21.4
|
1.0
|
CE1
|
B:HIS100
|
3.0
|
21.6
|
1.0
|
C1C
|
B:CLA604
|
3.0
|
20.6
|
1.0
|
C1A
|
B:CLA604
|
3.0
|
21.5
|
1.0
|
C1B
|
B:CLA604
|
3.1
|
20.4
|
1.0
|
C4C
|
B:CLA604
|
3.1
|
20.5
|
1.0
|
C4A
|
B:CLA604
|
3.1
|
22.2
|
1.0
|
C4B
|
B:CLA604
|
3.1
|
20.9
|
1.0
|
C1D
|
B:CLA604
|
3.1
|
19.6
|
1.0
|
CD2
|
B:HIS100
|
3.3
|
21.0
|
1.0
|
CHA
|
B:CLA604
|
3.4
|
22.8
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
22.7
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
19.3
|
1.0
|
CHD
|
B:CLA604
|
3.5
|
18.4
|
1.0
|
C2
|
B:CLA603
|
4.0
|
24.7
|
1.0
|
C1
|
B:CLA603
|
4.0
|
24.3
|
1.0
|
C3D
|
B:CLA604
|
4.1
|
19.9
|
1.0
|
ND1
|
B:HIS100
|
4.2
|
18.8
|
1.0
|
C2D
|
B:CLA604
|
4.2
|
21.6
|
1.0
|
C2C
|
B:CLA604
|
4.2
|
18.0
|
1.0
|
C2B
|
B:CLA604
|
4.2
|
23.4
|
1.0
|
C3C
|
B:CLA604
|
4.3
|
20.0
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
23.1
|
1.0
|
CG
|
B:HIS100
|
4.3
|
20.8
|
1.0
|
C2A
|
B:CLA604
|
4.4
|
19.8
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
19.6
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
19.0
|
1.0
|
|
Magnesium binding site 9 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 9 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:25.4
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
25.4
|
1.0
|
ND
|
B:CLA605
|
1.9
|
23.6
|
1.0
|
NB
|
B:CLA605
|
1.9
|
26.2
|
1.0
|
NC
|
B:CLA605
|
2.0
|
25.9
|
1.0
|
NA
|
B:CLA605
|
2.0
|
25.2
|
1.0
|
ND1
|
B:HIS157
|
2.2
|
24.9
|
1.0
|
CE1
|
B:HIS157
|
2.7
|
22.7
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
26.0
|
1.0
|
C1C
|
B:CLA605
|
3.0
|
25.2
|
1.0
|
C4B
|
B:CLA605
|
3.0
|
23.8
|
1.0
|
C1B
|
B:CLA605
|
3.1
|
25.3
|
1.0
|
C1A
|
B:CLA605
|
3.1
|
26.6
|
1.0
|
C1D
|
B:CLA605
|
3.1
|
29.2
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
28.1
|
1.0
|
C4A
|
B:CLA605
|
3.1
|
23.1
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
27.6
|
1.0
|
CG
|
B:HIS157
|
3.4
|
25.1
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
23.1
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
25.3
|
1.0
|
CHD
|
B:CLA605
|
3.5
|
27.3
|
1.0
|
C9
|
B:LFA622
|
3.8
|
32.7
|
1.0
|
NE2
|
B:HIS157
|
4.0
|
18.3
|
1.0
|
CB
|
B:HIS157
|
4.0
|
22.4
|
1.0
|
C3D
|
B:CLA605
|
4.1
|
31.5
|
1.0
|
C2D
|
B:CLA605
|
4.2
|
29.0
|
1.0
|
C2B
|
B:CLA605
|
4.2
|
24.6
|
1.0
|
C3B
|
B:CLA605
|
4.2
|
21.4
|
1.0
|
C2C
|
B:CLA605
|
4.3
|
26.0
|
1.0
|
C3C
|
B:CLA605
|
4.3
|
28.0
|
1.0
|
CD2
|
B:HIS157
|
4.3
|
22.2
|
1.0
|
C7
|
B:LFA622
|
4.4
|
32.1
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
24.6
|
1.0
|
C2A
|
B:CLA605
|
4.4
|
24.3
|
1.0
|
C10
|
B:LFA622
|
4.7
|
28.1
|
1.0
|
C8
|
B:LFA622
|
4.7
|
33.1
|
1.0
|
CD
|
B:PRO164
|
4.9
|
20.0
|
1.0
|
CBD
|
B:CLA605
|
5.0
|
25.1
|
1.0
|
|
Magnesium binding site 10 out
of 70 in 5mx2
Go back to
Magnesium Binding Sites List in 5mx2
Magnesium binding site 10 out
of 70 in the Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Photosystem II Depleted of the MN4CAO5 Cluster at 2.55 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:14.1
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
14.1
|
1.0
|
ND
|
B:CLA606
|
1.9
|
14.9
|
1.0
|
NC
|
B:CLA606
|
1.9
|
11.5
|
1.0
|
NB
|
B:CLA606
|
1.9
|
11.9
|
1.0
|
NA
|
B:CLA606
|
2.0
|
14.5
|
1.0
|
O
|
B:HOH762
|
2.2
|
17.2
|
1.0
|
C4D
|
B:CLA606
|
2.8
|
14.2
|
1.0
|
C1C
|
B:CLA606
|
2.9
|
15.4
|
1.0
|
C4B
|
B:CLA606
|
3.0
|
10.8
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
12.9
|
1.0
|
C1A
|
B:CLA606
|
3.0
|
14.8
|
1.0
|
C4A
|
B:CLA606
|
3.0
|
14.4
|
1.0
|
C1D
|
B:CLA606
|
3.1
|
16.6
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
12.6
|
1.0
|
CHA
|
B:CLA606
|
3.3
|
16.0
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
10.1
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
13.1
|
1.0
|
C12
|
B:LMG619
|
3.4
|
17.2
|
1.0
|
CHD
|
B:CLA606
|
3.5
|
15.6
|
1.0
|
O
|
B:HOH727
|
3.9
|
20.6
|
1.0
|
C3D
|
B:CLA606
|
4.1
|
18.6
|
1.0
|
C14
|
B:LMG619
|
4.1
|
16.2
|
1.0
|
C2B
|
B:CLA606
|
4.2
|
13.5
|
1.0
|
C3B
|
B:CLA606
|
4.2
|
13.2
|
1.0
|
C2D
|
B:CLA606
|
4.2
|
20.5
|
1.0
|
C2C
|
B:CLA606
|
4.2
|
16.2
|
1.0
|
C3C
|
B:CLA606
|
4.2
|
15.4
|
1.0
|
C13
|
B:LMG619
|
4.2
|
21.1
|
1.0
|
SD
|
B:MET37
|
4.3
|
19.3
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
16.5
|
1.0
|
C2A
|
B:CLA606
|
4.4
|
15.7
|
1.0
|
C11
|
B:LMG619
|
4.5
|
20.3
|
1.0
|
CD2
|
B:PHE61
|
4.5
|
16.5
|
1.0
|
CE
|
B:MET37
|
4.5
|
17.2
|
1.0
|
CB
|
B:PHE61
|
4.6
|
20.9
|
1.0
|
CG
|
B:PHE61
|
4.7
|
17.8
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
19.7
|
1.0
|
O9
|
B:LMG619
|
4.9
|
30.2
|
1.0
|
CBA
|
B:CLA606
|
4.9
|
16.4
|
1.0
|
|
Reference:
M.Zhang,
M.Bommer,
R.Chatterjee,
R.Hussein,
J.Yano,
H.Dau,
J.Kern,
H.Dobbek,
A.Zouni.
Structural Insights Into the Light-Driven Auto-Assembly Process of the Water-Oxidizing MN4CAO5-Cluster in Photosystem II. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28718766
DOI: 10.7554/ELIFE.26933
Page generated: Sun Sep 29 23:02:05 2024
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