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Magnesium in PDB 5n1q: Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution

Enzymatic activity of Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution

All present enzymatic activity of Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution:
2.8.4.1;

Protein crystallography data

The structure of Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution, PDB code: 5n1q was solved by T.Wagner, C.E.Wegner, U.Ermler, S.Shima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.63 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 111.811, 77.224, 145.458, 90.00, 107.01, 90.00
R / Rfree (%) 16.9 / 19

Other elements in 5n1q:

The structure of Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution (pdb code 5n1q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution, PDB code: 5n1q:

Magnesium binding site 1 out of 1 in 5n1q

Go back to Magnesium Binding Sites List in 5n1q
Magnesium binding site 1 out of 1 in the Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Methyl-Coenzyme M Reductase III From Methanothermococcus Thermolithotrophicus at 1.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg501

b:41.4
occ:1.00
O F:HOH403 2.0 28.8 1.0
O E:HOH736 2.0 46.5 1.0
O F:HOH486 2.1 49.0 1.0
O E:HOH818 2.2 36.9 1.0
O E:HOH644 2.3 34.1 1.0
OG1 E:THR292 3.8 31.6 1.0
O F:HOH419 3.9 39.5 1.0
OE1 F:GLN6 4.0 29.2 1.0
O E:HOH610 4.1 32.9 1.0
O F:HOH476 4.3 48.9 1.0
CB E:THR292 4.3 31.9 1.0
O F:HOH498 4.4 46.5 1.0
O E:HOH700 4.6 43.4 1.0
O E:HOH801 4.6 50.0 1.0
O E:GLY290 4.7 29.8 1.0
OH E:TYR294 4.8 37.6 1.0
CD F:GLN6 4.9 39.8 1.0
O F:LYS4 4.9 35.9 1.0

Reference:

T.Wagner, C.E.Wegner, J.Kahnt, U.Ermler, S.Shima. Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase From Methanococcales and Methanobacteriales. J.Bacteriol. V. 199 2017.
ISSN: ESSN 1098-5530
PubMed: 28559298
DOI: 10.1128/JB.00197-17
Page generated: Sun Sep 29 23:03:07 2024

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