Magnesium in PDB 5n5n: Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules

Magnesium Binding Sites:

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Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules (pdb code 5n5n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules, PDB code: 5n5n:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 5n5n

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Magnesium binding site 1 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:33.9
occ:1.00
 O2G B:G2P501 2.0 50.2 1.0
O1B B:G2P501 3.2 51.0 1.0
PG B:G2P501 3.3 50.2 1.0
O1G B:G2P501 3.7 50.2 1.0
CB B:GLN11 3.8 54.1 1.0
OD1 B:ASP69 3.8 54.3 1.0
OG1 B:THR145 3.9 61.6 1.0
N B:GLN11 4.0 52.8 1.0
O3B B:G2P501 4.1 50.6 1.0
CB B:THR145 4.1 61.7 1.0
CG2 B:THR145 4.1 62.1 1.0
PB B:G2P501 4.2 51.0 1.0
OE1 B:GLN11 4.2 55.5 1.0
CA B:GLN11 4.3 53.5 1.0
O3G B:G2P501 4.5 50.3 1.0
OD2 B:ASP69 4.5 54.5 1.0
CG B:ASP69 4.6 54.3 1.0
CG B:GLN11 4.7 54.7 1.0
CD B:GLN11 4.8 55.4 1.0
C B:GLY10 4.8 52.2 1.0
CG2 B:THR74 4.9 72.9 1.0
OE2 G:GLU254 4.9 55.6 1.0

Magnesium binding site 2 out of 12 in 5n5n

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Magnesium binding site 2 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg502

b:48.8
occ:1.00
 O3G K:GTP501 1.9 33.8 1.0
O1G K:GTP501 2.0 33.8 1.0
PG K:GTP501 2.3 33.8 1.0
O2B K:GTP501 3.0 33.9 1.0
O3B K:GTP501 3.4 33.8 1.0
OE1 K:GLN11 3.5 40.9 1.0
O2G K:GTP501 3.5 33.9 1.0
OE1 K:GLU71 3.7 53.2 1.0
PB K:GTP501 3.8 33.9 1.0
CB K:GLN11 3.9 40.4 1.0
CD K:GLU71 4.1 53.4 1.0
O3A K:GTP501 4.2 34.0 1.0
O2A K:GTP501 4.2 34.2 1.0
CD K:GLN11 4.4 40.8 1.0
OE2 K:GLU71 4.5 53.4 1.0
NZ B:LYS254 4.6 61.0 1.0
CG K:GLU71 4.7 53.4 1.0
PA K:GTP501 4.7 34.2 1.0
CG K:GLN11 4.8 40.6 1.0
OD1 K:ASP69 4.8 48.6 1.0
N K:GLN11 4.8 40.6 1.0
CA K:GLN11 4.9 40.3 1.0

Magnesium binding site 3 out of 12 in 5n5n

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Magnesium binding site 3 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg502

b:82.7
occ:1.00
 O3G G:GTP501 1.9 37.7 1.0
O1G G:GTP501 2.4 37.5 1.0
PG G:GTP501 2.6 37.6 1.0
OE1 G:GLN11 3.0 40.4 1.0
O2B G:GTP501 3.3 37.8 1.0
OE1 G:GLU71 3.7 56.2 1.0
O3B G:GTP501 3.7 37.7 1.0
CB G:GLN11 3.7 39.9 1.0
O2G G:GTP501 3.7 37.7 1.0
PB G:GTP501 4.0 37.7 1.0
O2A G:GTP501 4.0 38.4 1.0
CD G:GLN11 4.0 40.3 1.0
CD G:GLU71 4.1 56.4 1.0
O3A G:GTP501 4.2 38.0 1.0
OE2 G:GLU71 4.5 56.4 1.0
CG G:GLN11 4.5 40.1 1.0
NZ A:LYS254 4.6 68.0 1.0
PA G:GTP501 4.6 38.4 1.0
O A:ASN249 4.7 68.9 1.0
CG G:GLU71 4.8 56.4 1.0
CA G:GLN11 4.9 39.7 1.0
N G:GLN11 4.9 39.9 1.0
CE A:LYS254 5.0 68.0 1.0

Magnesium binding site 4 out of 12 in 5n5n

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Magnesium binding site 4 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg502

b:47.5
occ:1.00
 O3G H:GTP501 2.0 27.8 1.0
O1G H:GTP501 2.0 27.7 1.0
PG H:GTP501 2.3 27.8 1.0
O2B H:GTP501 3.1 27.7 1.0
O3B H:GTP501 3.5 27.7 1.0
OE1 H:GLN11 3.5 34.2 1.0
O2G H:GTP501 3.5 27.9 1.0
OE1 H:GLU71 3.7 48.5 1.0
PB H:GTP501 3.8 27.6 1.0
CB H:GLN11 3.9 33.7 1.0
CD H:GLU71 4.1 48.6 1.0
O3A H:GTP501 4.2 27.6 1.0
O2A H:GTP501 4.3 27.6 1.0
CD H:GLN11 4.5 34.1 1.0
OE2 H:GLU71 4.5 48.6 1.0
NZ C:LYS254 4.6 63.7 1.0
CG H:GLU71 4.6 48.5 1.0
OD1 H:ASP69 4.8 43.4 1.0
PA H:GTP501 4.8 27.6 1.0
CG H:GLN11 4.8 33.9 1.0
N H:GLN11 4.8 33.9 1.0
CA H:GLN11 4.9 33.6 1.0

Magnesium binding site 5 out of 12 in 5n5n

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Magnesium binding site 5 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg502

b:36.0
occ:1.00
 O3G I:GTP501 1.9 31.8 1.0
O1G I:GTP501 2.0 31.8 1.0
PG I:GTP501 2.3 31.8 1.0
O2B I:GTP501 3.0 32.0 1.0
O3B I:GTP501 3.4 31.9 1.0
O2G I:GTP501 3.5 31.9 1.0
OE1 I:GLN11 3.5 38.7 1.0
PB I:GTP501 3.7 31.9 1.0
OE1 I:GLU71 3.8 50.6 1.0
CB I:GLN11 3.9 38.1 1.0
CD I:GLU71 4.1 50.7 1.0
O3A I:GTP501 4.2 32.0 1.0
O2A I:GTP501 4.3 32.1 1.0
CD I:GLN11 4.5 38.5 1.0
OE2 I:GLU71 4.5 50.7 1.0
NZ D:LYS254 4.6 58.0 1.0
CG I:GLU71 4.7 50.7 1.0
PA I:GTP501 4.7 32.1 1.0
OD1 I:ASP69 4.8 46.3 1.0
N I:GLN11 4.8 38.4 1.0
CG I:GLN11 4.8 38.4 1.0
CA I:GLN11 4.9 38.0 1.0

Magnesium binding site 6 out of 12 in 5n5n

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Magnesium binding site 6 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg502

b:35.2
occ:1.00
 O3G J:GTP501 1.9 30.8 1.0
O1G J:GTP501 2.0 30.8 1.0
PG J:GTP501 2.3 30.8 1.0
O2B J:GTP501 2.8 31.0 1.0
O3B J:GTP501 3.3 30.9 1.0
OE1 J:GLN11 3.4 36.7 1.0
PB J:GTP501 3.5 30.9 1.0
O2G J:GTP501 3.6 30.9 1.0
CB J:GLN11 3.7 36.2 1.0
OE1 J:GLU71 3.9 47.0 1.0
O3A J:GTP501 3.9 31.0 1.0
O2A J:GTP501 4.1 31.2 1.0
CD J:GLU71 4.3 47.1 1.0
CD J:GLN11 4.4 36.5 1.0
PA J:GTP501 4.5 31.1 1.0
NZ E:LYS254 4.6 54.5 1.0
N J:GLN11 4.7 36.4 1.0
CG J:GLN11 4.7 36.3 1.0
OE2 J:GLU71 4.7 47.1 1.0
OD1 J:ASP69 4.8 42.7 1.0
CA J:GLN11 4.8 36.1 1.0
CG J:GLU71 4.8 47.0 1.0
O1A J:GTP501 4.9 31.1 1.0
O1B J:GTP501 5.0 31.0 1.0

Magnesium binding site 7 out of 12 in 5n5n

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Magnesium binding site 7 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg502

b:33.6
occ:1.00
 O3G L:GTP501 1.9 34.6 1.0
O1G L:GTP501 2.0 34.6 1.0
O2B L:GTP501 2.0 34.9 1.0
PG L:GTP501 2.2 34.7 1.0
PB L:GTP501 2.8 34.9 1.0
O3B L:GTP501 2.8 34.8 1.0
O3A L:GTP501 3.3 34.9 1.0
CB L:GLN11 3.5 38.2 1.0
O2G L:GTP501 3.6 34.8 1.0
OE1 L:GLN11 3.6 38.6 1.0
O2A L:GTP501 3.8 35.0 1.0
PA L:GTP501 4.0 35.0 1.0
N L:GLN11 4.2 38.4 1.0
O1B L:GTP501 4.2 34.9 1.0
O1A L:GTP501 4.4 35.0 1.0
CA L:GLN11 4.4 38.2 1.0
CD L:GLN11 4.5 38.5 1.0
CG L:GLN11 4.6 38.3 1.0
OE1 L:GLU71 4.6 51.9 1.0
OD1 L:ASP69 4.6 46.9 1.0
NZ F:LYS254 4.8 59.4 1.0
OG1 L:THR145 4.9 49.3 1.0
CD L:GLU71 5.0 52.0 1.0

Magnesium binding site 8 out of 12 in 5n5n

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Magnesium binding site 8 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:41.7
occ:1.00
 O2G A:G2P501 2.0 57.5 1.0
O1B A:G2P501 3.2 58.3 1.0
PG A:G2P501 3.3 57.6 1.0
O1G A:G2P501 3.7 57.5 1.0
OD1 A:ASP69 3.7 60.1 1.0
CB A:GLN11 3.8 59.9 1.0
OG1 A:THR145 3.9 68.3 1.0
N A:GLN11 4.0 58.5 1.0
O3B A:G2P501 4.1 57.9 1.0
CG2 A:THR145 4.1 68.9 1.0
CB A:THR145 4.1 68.4 1.0
PB A:G2P501 4.2 58.3 1.0
CA A:GLN11 4.3 59.4 1.0
OE1 A:GLN11 4.3 60.9 1.0
OD2 A:ASP69 4.4 60.3 1.0
O3G A:G2P501 4.4 57.6 1.0
CG A:ASP69 4.5 60.1 1.0
CG A:GLN11 4.7 60.4 1.0
C A:GLY10 4.8 57.8 1.0
CD A:GLN11 4.8 60.9 1.0
CG2 A:THR74 4.9 78.8 1.0

Magnesium binding site 9 out of 12 in 5n5n

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Magnesium binding site 9 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:36.2
occ:1.00
 O2G C:G2P501 2.0 54.5 1.0
O1B C:G2P501 3.2 55.1 1.0
PG C:G2P501 3.3 54.6 1.0
O1G C:G2P501 3.6 54.5 1.0
CB C:GLN11 3.8 57.0 1.0
OD1 C:ASP69 3.8 56.3 1.0
OG1 C:THR145 4.0 64.3 1.0
N C:GLN11 4.0 55.8 1.0
O3B C:G2P501 4.1 54.8 1.0
CB C:THR145 4.2 64.4 1.0
CG2 C:THR145 4.2 64.8 1.0
OE1 C:GLN11 4.2 58.0 1.0
PB C:G2P501 4.3 55.1 1.0
CA C:GLN11 4.3 56.5 1.0
O3G C:G2P501 4.4 54.6 1.0
OD2 C:ASP69 4.5 56.5 1.0
CG C:ASP69 4.6 56.3 1.0
CG C:GLN11 4.6 57.5 1.0
CD C:GLN11 4.7 58.0 1.0
C C:GLY10 4.9 55.2 1.0
CG2 C:THR74 4.9 74.3 1.0

Magnesium binding site 10 out of 12 in 5n5n

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Magnesium binding site 10 out of 12 in the Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of TSA201 Cell ALPHA1B and Betai and Betaivb Microtubules within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:31.4
occ:1.00
 O2G D:G2P501 2.0 47.5 1.0
O1B D:G2P501 3.1 48.2 1.0
PG D:G2P501 3.3 47.6 1.0
O1G D:G2P501 3.7 47.5 1.0
CB D:GLN11 3.8 51.9 1.0
OD1 D:ASP69 3.8 50.6 1.0
OG1 D:THR145 3.9 57.1 1.0
N D:GLN11 4.0 50.6 1.0
O3B D:G2P501 4.0 47.9 1.0
CB D:THR145 4.1 57.2 1.0
CG2 D:THR145 4.1 57.5 1.0
PB D:G2P501 4.2 48.3 1.0
OE1 D:GLN11 4.2 53.2 1.0
CA D:GLN11 4.3 51.3 1.0
O3G D:G2P501 4.5 47.6 1.0
OD2 D:ASP69 4.5 50.7 1.0
CG D:ASP69 4.6 50.5 1.0
CG D:GLN11 4.6 52.4 1.0
CD D:GLN11 4.8 53.0 1.0
C D:GLY10 4.8 49.9 1.0
OE2 H:GLU254 4.9 52.3 1.0
CG2 D:THR74 4.9 68.1 1.0

Reference:

A.Vemu, J.Atherton, J.O.Spector, C.A.Moores, A.Roll-Mecak. Tubulin Isoform Composition Tunes Microtubule Dynamics. Mol. Biol. Cell V. 28 3564 2017.
ISSN: ESSN 1939-4586
PubMed: 29021343
DOI: 10.1091/MBC.E17-02-0124
Page generated: Mon Dec 14 20:54:57 2020

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