Magnesium in PDB 5n9x: Structure of Adenylation Domain THR1 Involved in the Biosynthesis of 4-Chlorothreonine in Streptomyces Sp.Oh-5093, Ligand Bound Structure

The structure of Structure of Adenylation Domain THR1 Involved in the Biosynthesis of 4-Chlorothreonine in Streptomyces Sp.Oh-5093, Ligand Bound Structure, PDB code: 5n9x was solved by C.Savino, B.Vallone, A.Scaglione, G.Parisi, L.C.Montemiglio, M.R.Fullone, I.Grgurina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.87 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	179.022, 52.524, 110.119, 90.00, 105.95, 90.00
R / Rfree (%)	19.9 / 27.6

The binding sites of Magnesium atom in the Structure of Adenylation Domain THR1 Involved in the Biosynthesis of 4-Chlorothreonine in Streptomyces Sp.Oh-5093, Ligand Bound Structure (pdb code 5n9x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Adenylation Domain THR1 Involved in the Biosynthesis of 4-Chlorothreonine in Streptomyces Sp.Oh-5093, Ligand Bound Structure, PDB code: 5n9x:

Magnesium binding site 1 out of 1 in the Structure of Adenylation Domain THR1 Involved in the Biosynthesis of 4-Chlorothreonine in Streptomyces Sp.Oh-5093, Ligand Bound Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Adenylation Domain THR1 Involved in the Biosynthesis of 4-Chlorothreonine in Streptomyces Sp.Oh-5093, Ligand Bound Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:54.3 occ:1.00 O1G A:ATP602 2.2 65.8 1.0 O1B A:ATP602 2.2 53.2 1.0 O A:HOH708 2.4 37.0 1.0 O3' A:ATP602 2.7 38.6 1.0 PG A:ATP602 3.2 74.4 1.0 PB A:ATP602 3.3 66.0 1.0 O3B A:ATP602 3.4 72.0 1.0 NH1 A:ARG421 3.5 33.1 1.0 O A:HOH706 3.5 16.8 1.0 CZ A:ARG421 3.7 45.1 1.0 NH2 A:ARG421 3.7 41.7 1.0 C3' A:ATP602 3.8 25.2 1.0 C4' A:ATP602 3.9 30.3 1.0 O3G A:ATP602 3.9 69.9 1.0 O3A A:ATP602 3.9 60.5 1.0 C5' A:ATP602 4.2 32.9 1.0 O5' A:ATP602 4.4 43.9 1.0 NE A:ARG421 4.4 53.8 1.0 CG2 A:ILE313 4.5 18.1 1.0 O2G A:ATP602 4.5 60.1 1.0 O A:SER404 4.7 22.9 1.0 O2B A:ATP602 4.7 42.9 1.0 PA A:ATP602 4.9 65.7 1.0 O2' A:ATP602 4.9 22.8 1.0

A.Scaglione, M.R.Fullone, L.C.Montemiglio, G.Parisi, C.Zamparelli, B.Vallone, C.Savino, I.Grgurina. Structure of the Adenylation Domain THR1 Involved in the Biosynthesis of 4-Chlorothreonine in Streptomyces Sp. Oh-5093-Protein Flexibility and Molecular Bases of Substrate Specificity. Febs J. V. 284 2981 2017.
ISSN: ISSN 1742-4658
PubMed: 28704585
DOI: 10.1111/FEBS.14163