Magnesium in PDB 5nd2: Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp

The binding sites of Magnesium atom in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp (pdb code 5nd2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp, PDB code: 5nd2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:11.1 occ:1.00 OG1 C:THR166 1.7 89.2 1.0 O3B C:ADP601 2.2 19.3 1.0 CB C:THR166 2.8 89.2 1.0 PB C:ADP601 3.3 19.3 1.0 O2B C:ADP601 3.3 19.3 1.0 CG2 C:THR166 3.8 89.2 1.0 CA C:THR166 3.8 89.2 1.0 N C:THR166 3.8 89.2 1.0 O1A C:ADP601 3.9 19.3 1.0 O3A C:ADP601 4.2 19.3 1.0 PA C:ADP601 4.4 19.3 1.0 O1B C:ADP601 4.5 19.3 1.0 O2A C:ADP601 4.6 19.3 1.0 OD2 C:ASP407 4.8 14.0 1.0 C C:LYS165 5.0 0.9 1.0

Magnesium binding site 2 out of 2 in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:18.6 occ:1.00 CB A:GLN11 2.4 2.9 1.0 O2G A:GTP500 2.4 1.7 1.0 OE1 A:GLN11 3.0 2.9 1.0 CG A:GLN11 3.1 2.9 1.0 O2B A:GTP500 3.2 1.7 1.0 OD2 A:ASP69 3.3 0.1 1.0 CD A:GLN11 3.3 2.9 1.0 CA A:GLN11 3.3 2.9 1.0 N A:GLN11 3.4 2.9 1.0 PG A:GTP500 3.7 1.7 1.0 O3B A:GTP500 3.7 1.7 1.0 PB A:GTP500 3.8 1.7 1.0 OD1 A:ASP69 3.9 0.1 1.0 CG2 A:VAL74 3.9 0.1 1.0 CG A:ASP69 4.0 0.1 1.0 O3A A:GTP500 4.1 1.7 1.0 NE2 A:GLN11 4.4 2.9 1.0 O1A A:GTP500 4.4 1.7 1.0 O1G A:GTP500 4.5 1.7 1.0 C A:GLY10 4.6 0.0 1.0 C A:GLN11 4.7 2.9 1.0 PA A:GTP500 4.8 1.7 1.0 CB A:ALA99 4.8 3.2 1.0 CB A:GLU71 4.8 0.1 1.0 O3G A:GTP500 4.9 1.7 1.0 NZ B:LYS254 4.9 0.8 1.0 CB A:VAL74 4.9 0.1 1.0 CG1 A:VAL74 4.9 0.1 1.0 OD1 B:ASN249 4.9 8.7 1.0 OG1 A:THR145 5.0 0.0 1.0

J.Atherton, I.M.Yu, A.Cook, J.M.Muretta, A.Joseph, J.Major, Y.Sourigues, J.Clause, M.Topf, S.S.Rosenfeld, A.Houdusse, C.A.Moores. The Divergent Mitotic Kinesin MKLP2 Exhibits Atypical Structure and Mechanochemistry. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28826477
DOI: 10.7554/ELIFE.27793