Magnesium in PDB 5nd4: Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp.Alfx

The structure of Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp.Alfx also contains other interesting chemical elements:

Fluorine	(F)	4 atoms
Aluminium	(Al)	1 atom

The binding sites of Magnesium atom in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp.Alfx (pdb code 5nd4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp.Alfx, PDB code: 5nd4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp.Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp.Alfx within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:0.4 occ:1.00 OG1 C:THR166 1.7 17.7 1.0 O2B C:ADP601 2.1 26.8 1.0 F4 C:ALF603 2.2 2.6 1.0 OG C:SER377 2.3 3.6 1.0 CB C:THR166 3.1 17.7 1.0 PB C:ADP601 3.2 26.8 1.0 NZ C:LYS165 3.3 0.7 1.0 F1 C:ALF603 3.3 2.6 1.0 N C:THR166 3.5 17.7 1.0 O1A C:ADP601 3.5 26.8 1.0 O3A C:ADP601 3.5 26.8 1.0 AL C:ALF603 3.6 2.6 1.0 O3B C:ADP601 3.7 26.8 1.0 CB C:SER377 3.7 3.6 1.0 CA C:THR166 3.7 17.7 1.0 PA C:ADP601 3.8 26.8 1.0 O2A C:ADP601 3.9 26.8 1.0 CG2 C:THR166 3.9 17.7 1.0 N C:SER377 4.0 3.6 1.0 CE C:LYS165 4.3 0.7 1.0 O1B C:ADP601 4.4 26.8 1.0 CA C:SER377 4.5 3.6 1.0 C C:LYS165 4.5 0.7 1.0 OD2 C:ASP407 4.5 9.6 1.0 OD1 C:ASP407 4.5 9.6 1.0 CB C:LYS165 4.7 0.7 1.0 F2 C:ALF603 4.7 2.6 1.0 C C:SER376 4.8 27.0 1.0 CA C:SER376 4.8 27.0 1.0 O C:GLN375 4.9 73.2 1.0 N C:LYS165 5.0 0.7 1.0 CA C:LYS165 5.0 0.7 1.0 CG C:ASP407 5.0 9.6 1.0

Magnesium binding site 2 out of 2 in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp.Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Microtubule-Bound MKLP2 Motor Domain in the Presence of Adp.Alfx within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:0.0 occ:1.00 CB A:GLN11 2.4 0.0 1.0 O2G A:GTP500 2.4 0.0 1.0 CG A:GLN11 3.1 0.0 1.0 CD A:GLN11 3.1 0.0 1.0 NE2 A:GLN11 3.2 0.0 1.0 O2B A:GTP500 3.2 0.0 1.0 CA A:GLN11 3.5 0.0 1.0 OD2 A:ASP69 3.6 0.0 1.0 PG A:GTP500 3.7 0.0 1.0 O3B A:GTP500 3.7 0.0 1.0 N A:GLN11 3.8 0.0 1.0 NZ B:LYS254 3.8 0.0 1.0 PB A:GTP500 3.8 0.0 1.0 OE1 A:GLN11 3.8 0.0 1.0 CB A:GLU71 3.9 0.0 1.0 OE1 A:GLU71 4.1 0.0 1.0 O3A A:GTP500 4.1 0.0 1.0 CG A:GLU71 4.2 0.0 1.0 OD1 A:ASP69 4.3 0.0 1.0 O1A A:GTP500 4.4 0.0 1.0 CG A:ASP69 4.4 0.0 1.0 CG2 A:VAL74 4.4 0.0 1.0 O1G A:GTP500 4.5 0.0 1.0 CD A:GLU71 4.7 0.0 1.0 CE B:LYS254 4.8 0.0 1.0 C A:GLN11 4.8 0.0 1.0 ND2 B:ASN249 4.8 0.0 1.0 PA A:GTP500 4.8 0.0 1.0 CB A:ALA99 4.9 0.0 1.0 O3G A:GTP500 4.9 0.0 1.0 OG1 A:THR145 4.9 0.0 1.0

J.Atherton, I.M.Yu, A.Cook, J.M.Muretta, A.Joseph, J.Major, Y.Sourigues, J.Clause, M.Topf, S.S.Rosenfeld, A.Houdusse, C.A.Moores. The Divergent Mitotic Kinesin MKLP2 Exhibits Atypical Structure and Mechanochemistry. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28826477
DOI: 10.7554/ELIFE.27793