Magnesium in PDB 5nd7: Microtubule-Bound MKLP2 Motor Domain in the Presence of Amppnp

The binding sites of Magnesium atom in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Amppnp (pdb code 5nd7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Amppnp, PDB code: 5nd7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Microtubule-Bound MKLP2 Motor Domain in the Presence of Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:60.7 occ:1.00 OG1 C:THR166 1.6 0.0 1.0 O2G C:ANP602 2.2 7.8 1.0 O2B C:ANP602 2.5 7.8 1.0 CB C:THR166 3.0 0.0 1.0 OD2 C:ASP407 3.4 0.0 1.0 PB C:ANP602 3.4 7.8 1.0 PG C:ANP602 3.5 7.8 1.0 N3B C:ANP602 3.6 7.8 1.0 OD1 C:ASP407 3.8 0.0 1.0 CG2 C:THR166 3.9 0.0 1.0 N C:THR166 3.9 0.0 1.0 CA C:THR166 4.0 0.0 1.0 CG C:ASP407 4.0 0.0 1.0 O C:LEU408 4.1 0.0 1.0 CA C:ALA409 4.2 0.0 1.0 O3A C:ANP602 4.2 7.8 1.0 PA C:ANP602 4.4 7.8 1.0 O3G C:ANP602 4.4 7.8 1.0 O1G C:ANP602 4.4 7.8 1.0 O1A C:ANP602 4.7 7.8 1.0 C C:LEU408 4.8 0.0 1.0 CB C:ALA409 4.8 0.0 1.0 O1B C:ANP602 4.8 7.8 1.0 N C:ALA409 4.8 0.0 1.0 C C:LYS165 5.0 0.0 1.0

Magnesium binding site 2 out of 2 in the Microtubule-Bound MKLP2 Motor Domain in the Presence of Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Microtubule-Bound MKLP2 Motor Domain in the Presence of Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:18.6 occ:1.00 O2G A:GTP500 2.4 28.7 1.0 OE1 A:GLU71 2.6 0.0 1.0 CB A:GLN11 3.0 0.0 1.0 O2B A:GTP500 3.2 41.2 1.0 OD1 B:ASN249 3.4 0.0 1.0 OE1 A:GLN11 3.4 0.0 1.0 CD A:GLU71 3.5 0.0 1.0 CG A:GLN11 3.6 0.0 1.0 PG A:GTP500 3.7 30.0 1.0 O3B A:GTP500 3.7 35.2 1.0 CG A:GLU71 3.7 0.0 1.0 CD A:GLN11 3.8 0.0 1.0 CB A:GLU71 3.8 0.0 1.0 PB A:GTP500 3.8 41.4 1.0 OD2 A:ASP69 3.9 0.0 1.0 CG2 A:VAL74 3.9 0.0 1.0 ND2 B:ASN249 4.1 0.0 1.0 CA A:GLN11 4.1 0.0 1.0 O3A A:GTP500 4.1 39.2 1.0 CG B:ASN249 4.1 0.0 1.0 NZ B:LYS254 4.2 0.0 1.0 N A:GLN11 4.2 0.0 1.0 O1A A:GTP500 4.4 44.5 1.0 OD1 A:ASP69 4.5 0.0 1.0 O1G A:GTP500 4.5 35.0 1.0 CE B:LYS254 4.5 0.0 1.0 CG A:ASP69 4.6 0.0 1.0 OE2 A:GLU71 4.7 0.0 1.0 PA A:GTP500 4.8 41.3 1.0 O3G A:GTP500 4.9 32.1 1.0 NE2 A:GLN11 5.0 0.0 1.0

J.Atherton, I.M.Yu, A.Cook, J.M.Muretta, A.Joseph, J.Major, Y.Sourigues, J.Clause, M.Topf, S.S.Rosenfeld, A.Houdusse, C.A.Moores. The Divergent Mitotic Kinesin MKLP2 Exhibits Atypical Structure and Mechanochemistry. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28826477
DOI: 10.7554/ELIFE.27793