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Magnesium in PDB 5nkl: Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp
Enzymatic activity of Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp
All present enzymatic activity of Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp, PDB code: 5nkl
was solved by
K.Betz,
A.Marx,
K.Diederichs,
I.Hirao,
M.Kimoto,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.10 / 1.70 |
| Space group | P 31 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 108.777, 108.777, 90.571, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 18.1 / 23.7 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp
(pdb code 5nkl). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp, PDB code: 5nkl:
Jump to Magnesium binding site number: 1; 2;
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp, PDB code: 5nkl:
Jump to Magnesium binding site number: 1; 2;
Magnesium binding site 1 out of 2 in 5nkl
Go back to
Magnesium Binding Sites List in 5nkl
Magnesium binding site 1 out
of 2 in the Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp within 5.0Å range:
|
Magnesium binding site 2 out of 2 in 5nkl
Go back to
Magnesium Binding Sites List in 5nkl
Magnesium binding site 2 out
of 2 in the Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of the Large Fragment of Dna Polymerase I From Thermus Aquaticus in A Closed Ternary Complex with the Artificial Base Pair Dds-Dpxtp within 5.0Å range:
|
Reference:
K.Betz,
M.Kimoto,
K.Diederichs,
I.Hirao,
A.Marx.
Structural Basis For Expansion of the Genetic Alphabet with An Artificial Nucleobase Pair. Angew. Chem. Int. Ed. Engl. V. 56 12000 2017.
ISSN: ESSN 1521-3773
PubMed: 28594080
DOI: 10.1002/ANIE.201704190
Page generated: Mon Dec 14 20:55:59 2020
ISSN: ESSN 1521-3773
PubMed: 28594080
DOI: 10.1002/ANIE.201704190
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