Magnesium in PDB 5noj: CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State (pdb code 5noj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State, PDB code: 5noj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 5noj

Go back to Magnesium Binding Sites List in 5noj
Magnesium binding site 1 out of 5 in the CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:23.8
occ:1.00
O2B A:ADP401 2.5 67.6 1.0
OE1 A:GLN137 3.0 0.8 1.0
O3B A:ADP401 3.2 62.9 1.0
PB A:ADP401 3.4 64.3 1.0
CD A:GLN137 3.4 100.0 1.0
NE2 A:GLN137 3.4 0.8 1.0
OD1 A:ASP154 3.7 86.8 1.0
OD2 A:ASP154 4.0 87.3 1.0
O3A A:ADP401 4.1 59.3 1.0
O2A A:ADP401 4.2 60.4 1.0
CG A:ASP154 4.3 84.8 1.0
CA A:GLY156 4.5 63.3 1.0
OD2 A:ASP11 4.5 98.2 1.0
CG A:GLN137 4.6 89.0 1.0
OD1 A:ASP11 4.7 0.1 1.0
O1B A:ADP401 4.7 63.9 1.0
PA A:ADP401 4.8 57.4 1.0
N A:GLY156 5.0 60.4 1.0

Magnesium binding site 2 out of 5 in 5noj

Go back to Magnesium Binding Sites List in 5noj
Magnesium binding site 2 out of 5 in the CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:23.8
occ:1.00
O2B B:ADP401 2.5 67.6 1.0
OE1 B:GLN137 3.0 0.8 1.0
O3B B:ADP401 3.2 62.9 1.0
PB B:ADP401 3.4 64.3 1.0
CD B:GLN137 3.4 100.0 1.0
NE2 B:GLN137 3.4 0.8 1.0
OD1 B:ASP154 3.7 86.8 1.0
OD2 B:ASP154 4.0 87.3 1.0
O3A B:ADP401 4.1 59.3 1.0
O2A B:ADP401 4.2 60.4 1.0
CG B:ASP154 4.3 84.8 1.0
CA B:GLY156 4.5 63.3 1.0
OD2 B:ASP11 4.5 98.2 1.0
CG B:GLN137 4.6 89.0 1.0
OD1 B:ASP11 4.7 0.1 1.0
O1B B:ADP401 4.7 63.9 1.0
PA B:ADP401 4.8 57.4 1.0
N B:GLY156 5.0 60.4 1.0

Magnesium binding site 3 out of 5 in 5noj

Go back to Magnesium Binding Sites List in 5noj
Magnesium binding site 3 out of 5 in the CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:23.8
occ:1.00
O2B C:ADP401 2.5 67.6 1.0
OE1 C:GLN137 3.0 0.8 1.0
O3B C:ADP401 3.2 62.9 1.0
PB C:ADP401 3.4 64.3 1.0
CD C:GLN137 3.4 100.0 1.0
NE2 C:GLN137 3.4 0.8 1.0
OD1 C:ASP154 3.7 86.8 1.0
OD2 C:ASP154 4.0 87.3 1.0
O3A C:ADP401 4.1 59.3 1.0
O2A C:ADP401 4.2 60.4 1.0
CG C:ASP154 4.3 84.8 1.0
CA C:GLY156 4.5 63.3 1.0
OD2 C:ASP11 4.5 98.2 1.0
CG C:GLN137 4.6 89.0 1.0
OD1 C:ASP11 4.7 0.1 1.0
O1B C:ADP401 4.7 63.9 1.0
PA C:ADP401 4.8 57.4 1.0
N C:GLY156 5.0 60.4 1.0

Magnesium binding site 4 out of 5 in 5noj

Go back to Magnesium Binding Sites List in 5noj
Magnesium binding site 4 out of 5 in the CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:23.8
occ:1.00
O2B D:ADP401 2.5 67.6 1.0
OE1 D:GLN137 3.0 0.8 1.0
O3B D:ADP401 3.2 62.9 1.0
PB D:ADP401 3.4 64.3 1.0
CD D:GLN137 3.4 100.0 1.0
NE2 D:GLN137 3.4 0.8 1.0
OD1 D:ASP154 3.7 86.8 1.0
OD2 D:ASP154 4.0 87.3 1.0
O3A D:ADP401 4.1 59.3 1.0
O2A D:ADP401 4.2 60.4 1.0
CG D:ASP154 4.3 84.8 1.0
CA D:GLY156 4.5 63.3 1.0
OD2 D:ASP11 4.5 98.2 1.0
CG D:GLN137 4.6 89.0 1.0
OD1 D:ASP11 4.7 0.1 1.0
O1B D:ADP401 4.7 63.9 1.0
PA D:ADP401 4.8 57.4 1.0
N D:GLY156 5.0 60.4 1.0

Magnesium binding site 5 out of 5 in 5noj

Go back to Magnesium Binding Sites List in 5noj
Magnesium binding site 5 out of 5 in the CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of CA2+-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments - "Open" State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:23.8
occ:1.00
O2B E:ADP401 2.5 67.6 1.0
OE1 E:GLN137 3.0 0.8 1.0
O3B E:ADP401 3.2 62.9 1.0
PB E:ADP401 3.4 64.3 1.0
CD E:GLN137 3.4 100.0 1.0
NE2 E:GLN137 3.4 0.8 1.0
OD1 E:ASP154 3.7 86.8 1.0
OD2 E:ASP154 4.0 87.3 1.0
O3A E:ADP401 4.1 59.3 1.0
O2A E:ADP401 4.2 60.4 1.0
CG E:ASP154 4.3 84.8 1.0
CA E:GLY156 4.5 63.3 1.0
OD2 E:ASP11 4.5 98.2 1.0
CG E:GLN137 4.6 89.0 1.0
OD1 E:ASP11 4.7 0.1 1.0
O1B E:ADP401 4.7 63.9 1.0
PA E:ADP401 4.8 57.4 1.0
N E:GLY156 5.0 60.4 1.0

Reference:

C.Risi, J.Eisner, B.Belknap, D.H.Heeley, H.D.White, G.F.Schroder, V.E.Galkin. Ca(2+)-Induced Movement of Tropomyosin on Native Cardiac Thin Filaments Revealed By Cryoelectron Microscopy. Proc. Natl. Acad. Sci. V. 114 6782 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28607071
DOI: 10.1073/PNAS.1700868114
Page generated: Mon Dec 14 20:56:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy