Magnesium in PDB 5nv3: Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
Enzymatic activity of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
All present enzymatic activity of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp:
4.1.1.39;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
(pdb code 5nv3). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp, PDB code: 5nv3:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 5nv3
Go back to
Magnesium Binding Sites List in 5nv3
Magnesium binding site 1 out
of 8 in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1002
b:0.0
occ:1.00
|
OQ2
|
A:KCX203
|
2.2
|
0.0
|
1.0
|
|
OE1
|
A:GLU206
|
2.3
|
0.3
|
1.0
|
|
O3
|
A:CAP1001
|
2.6
|
0.9
|
1.0
|
|
O2
|
A:CAP1001
|
2.7
|
0.3
|
1.0
|
|
O7
|
A:CAP1001
|
2.9
|
0.2
|
1.0
|
|
OD2
|
A:ASP205
|
2.9
|
0.6
|
1.0
|
|
CG
|
A:ASP205
|
3.4
|
0.5
|
1.0
|
|
CX
|
A:KCX203
|
3.4
|
0.7
|
1.0
|
|
CD
|
A:GLU206
|
3.4
|
0.2
|
1.0
|
|
C2
|
A:CAP1001
|
3.5
|
0.9
|
1.0
|
|
C3
|
A:CAP1001
|
3.6
|
0.5
|
1.0
|
|
C
|
A:CAP1001
|
3.6
|
0.8
|
1.0
|
|
NZ
|
A:LYS179
|
3.7
|
0.2
|
1.0
|
|
OD1
|
A:ASP205
|
3.7
|
0.1
|
1.0
|
|
CG2
|
A:THR175
|
3.9
|
0.8
|
1.0
|
|
OE2
|
A:GLU206
|
3.9
|
1.0
|
1.0
|
|
OQ1
|
A:KCX203
|
3.9
|
0.2
|
1.0
|
|
NE2
|
A:HIS295
|
4.0
|
0.5
|
1.0
|
|
N
|
A:GLU206
|
4.0
|
0.8
|
1.0
|
|
CA
|
A:ASP205
|
4.1
|
0.1
|
1.0
|
|
CB
|
A:ASP205
|
4.3
|
0.3
|
1.0
|
|
NZ
|
A:KCX203
|
4.4
|
0.5
|
1.0
|
|
ND2
|
E:ASN125
|
4.5
|
0.5
|
1.0
|
|
CE1
|
A:HIS295
|
4.6
|
0.5
|
1.0
|
|
C
|
A:ASP205
|
4.6
|
0.2
|
1.0
|
|
CG
|
A:GLU206
|
4.7
|
0.6
|
1.0
|
|
NZ
|
A:LYS177
|
4.7
|
0.2
|
1.0
|
|
CD2
|
A:HIS295
|
4.8
|
0.3
|
1.0
|
|
OG1
|
A:THR175
|
4.8
|
0.5
|
1.0
|
|
CB
|
A:GLU206
|
4.8
|
0.4
|
1.0
|
|
C4
|
A:CAP1001
|
4.8
|
0.6
|
1.0
|
|
O6
|
A:CAP1001
|
4.9
|
0.3
|
1.0
|
|
CE
|
A:LYS179
|
4.9
|
0.0
|
1.0
|
|
CB
|
A:THR175
|
4.9
|
0.9
|
1.0
|
|
C1
|
A:CAP1001
|
4.9
|
0.2
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 5nv3
Go back to
Magnesium Binding Sites List in 5nv3
Magnesium binding site 2 out
of 8 in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1002
b:0.4
occ:1.00
|
OQ2
|
B:KCX203
|
2.2
|
0.3
|
1.0
|
|
OE1
|
B:GLU206
|
2.4
|
0.7
|
1.0
|
|
O3
|
B:CAP1001
|
2.6
|
0.4
|
1.0
|
|
O2
|
B:CAP1001
|
2.7
|
0.6
|
1.0
|
|
O7
|
B:CAP1001
|
2.8
|
0.9
|
1.0
|
|
OD2
|
B:ASP205
|
2.9
|
0.8
|
1.0
|
|
CG
|
B:ASP205
|
3.4
|
0.7
|
1.0
|
|
CX
|
B:KCX203
|
3.4
|
0.7
|
1.0
|
|
CD
|
B:GLU206
|
3.4
|
0.5
|
1.0
|
|
C2
|
B:CAP1001
|
3.5
|
0.1
|
1.0
|
|
C
|
B:CAP1001
|
3.6
|
0.5
|
1.0
|
|
C3
|
B:CAP1001
|
3.6
|
0.3
|
1.0
|
|
NZ
|
B:LYS179
|
3.6
|
0.6
|
1.0
|
|
OD1
|
B:ASP205
|
3.7
|
0.5
|
1.0
|
|
OQ1
|
B:KCX203
|
3.9
|
0.9
|
1.0
|
|
OE2
|
B:GLU206
|
3.9
|
0.5
|
1.0
|
|
CG2
|
B:THR175
|
3.9
|
0.3
|
1.0
|
|
NE2
|
B:HIS295
|
4.0
|
1.0
|
1.0
|
|
N
|
B:GLU206
|
4.0
|
0.4
|
1.0
|
|
CA
|
B:ASP205
|
4.1
|
0.6
|
1.0
|
|
CB
|
B:ASP205
|
4.3
|
0.9
|
1.0
|
|
NZ
|
B:KCX203
|
4.4
|
0.3
|
1.0
|
|
ND2
|
F:ASN125
|
4.5
|
0.9
|
1.0
|
|
CE1
|
B:HIS295
|
4.6
|
0.7
|
1.0
|
|
C
|
B:ASP205
|
4.6
|
0.4
|
1.0
|
|
NZ
|
B:LYS177
|
4.7
|
0.9
|
1.0
|
|
CG
|
B:GLU206
|
4.7
|
0.9
|
1.0
|
|
OG1
|
B:THR175
|
4.8
|
0.0
|
1.0
|
|
O6
|
B:CAP1001
|
4.8
|
0.1
|
1.0
|
|
CB
|
B:GLU206
|
4.8
|
1.0
|
1.0
|
|
CD2
|
B:HIS295
|
4.8
|
0.6
|
1.0
|
|
C4
|
B:CAP1001
|
4.8
|
0.3
|
1.0
|
|
CE
|
B:LYS179
|
4.8
|
0.5
|
1.0
|
|
CB
|
B:THR175
|
4.9
|
0.3
|
1.0
|
|
C1
|
B:CAP1001
|
4.9
|
0.1
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 5nv3
Go back to
Magnesium Binding Sites List in 5nv3
Magnesium binding site 3 out
of 8 in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1002
b:0.7
occ:1.00
|
OQ2
|
C:KCX203
|
2.2
|
0.8
|
1.0
|
|
OE1
|
C:GLU206
|
2.3
|
0.4
|
1.0
|
|
O3
|
C:CAP1001
|
2.6
|
0.2
|
1.0
|
|
O2
|
C:CAP1001
|
2.7
|
0.1
|
1.0
|
|
O7
|
C:CAP1001
|
2.9
|
0.3
|
1.0
|
|
OD2
|
C:ASP205
|
2.9
|
0.8
|
1.0
|
|
CG
|
C:ASP205
|
3.4
|
0.6
|
1.0
|
|
CX
|
C:KCX203
|
3.4
|
0.9
|
1.0
|
|
CD
|
C:GLU206
|
3.4
|
0.1
|
1.0
|
|
C2
|
C:CAP1001
|
3.5
|
0.9
|
1.0
|
|
C3
|
C:CAP1001
|
3.6
|
0.3
|
1.0
|
|
C
|
C:CAP1001
|
3.6
|
0.2
|
1.0
|
|
NZ
|
C:LYS179
|
3.7
|
0.9
|
1.0
|
|
OD1
|
C:ASP205
|
3.7
|
0.3
|
1.0
|
|
OE2
|
C:GLU206
|
3.9
|
0.7
|
1.0
|
|
CG2
|
C:THR175
|
3.9
|
0.5
|
1.0
|
|
OQ1
|
C:KCX203
|
3.9
|
0.7
|
1.0
|
|
NE2
|
C:HIS295
|
4.0
|
0.3
|
1.0
|
|
N
|
C:GLU206
|
4.0
|
0.9
|
1.0
|
|
CA
|
C:ASP205
|
4.1
|
0.1
|
1.0
|
|
CB
|
C:ASP205
|
4.3
|
0.1
|
1.0
|
|
NZ
|
C:KCX203
|
4.4
|
1.0
|
1.0
|
|
ND2
|
G:ASN125
|
4.5
|
0.4
|
1.0
|
|
CE1
|
C:HIS295
|
4.6
|
0.1
|
1.0
|
|
C
|
C:ASP205
|
4.6
|
0.5
|
1.0
|
|
CG
|
C:GLU206
|
4.7
|
0.9
|
1.0
|
|
NZ
|
C:LYS177
|
4.7
|
0.5
|
1.0
|
|
OG1
|
C:THR175
|
4.8
|
0.1
|
1.0
|
|
CD2
|
C:HIS295
|
4.8
|
0.7
|
1.0
|
|
CB
|
C:GLU206
|
4.8
|
0.4
|
1.0
|
|
C4
|
C:CAP1001
|
4.8
|
0.5
|
1.0
|
|
O6
|
C:CAP1001
|
4.8
|
0.9
|
1.0
|
|
CE
|
C:LYS179
|
4.8
|
0.8
|
1.0
|
|
CB
|
C:THR175
|
4.9
|
0.7
|
1.0
|
|
C1
|
C:CAP1001
|
4.9
|
0.7
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 5nv3
Go back to
Magnesium Binding Sites List in 5nv3
Magnesium binding site 4 out
of 8 in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1002
b:0.5
occ:1.00
|
OQ2
|
D:KCX203
|
2.2
|
0.4
|
1.0
|
|
OE1
|
D:GLU206
|
2.4
|
0.3
|
1.0
|
|
O3
|
D:CAP1001
|
2.6
|
0.8
|
1.0
|
|
O2
|
D:CAP1001
|
2.7
|
0.4
|
1.0
|
|
O7
|
D:CAP1001
|
2.8
|
0.2
|
1.0
|
|
OD2
|
D:ASP205
|
2.9
|
0.1
|
1.0
|
|
CG
|
D:ASP205
|
3.4
|
0.9
|
1.0
|
|
CX
|
D:KCX203
|
3.4
|
0.5
|
1.0
|
|
CD
|
D:GLU206
|
3.4
|
0.4
|
1.0
|
|
C2
|
D:CAP1001
|
3.5
|
0.3
|
1.0
|
|
C
|
D:CAP1001
|
3.6
|
0.9
|
1.0
|
|
C3
|
D:CAP1001
|
3.6
|
0.1
|
1.0
|
|
NZ
|
D:LYS179
|
3.6
|
0.8
|
1.0
|
|
OD1
|
D:ASP205
|
3.7
|
0.6
|
1.0
|
|
OQ1
|
D:KCX203
|
3.9
|
0.1
|
1.0
|
|
OE2
|
D:GLU206
|
3.9
|
0.2
|
1.0
|
|
CG2
|
D:THR175
|
3.9
|
0.7
|
1.0
|
|
NE2
|
D:HIS295
|
4.0
|
0.4
|
1.0
|
|
N
|
D:GLU206
|
4.0
|
0.1
|
1.0
|
|
CA
|
D:ASP205
|
4.1
|
0.5
|
1.0
|
|
CB
|
D:ASP205
|
4.3
|
0.5
|
1.0
|
|
NZ
|
D:KCX203
|
4.4
|
0.1
|
1.0
|
|
ND2
|
H:ASN125
|
4.5
|
0.6
|
1.0
|
|
CE1
|
D:HIS295
|
4.6
|
0.6
|
1.0
|
|
C
|
D:ASP205
|
4.6
|
0.5
|
1.0
|
|
NZ
|
D:LYS177
|
4.6
|
0.5
|
1.0
|
|
CG
|
D:GLU206
|
4.7
|
0.0
|
1.0
|
|
OG1
|
D:THR175
|
4.8
|
0.9
|
1.0
|
|
CD2
|
D:HIS295
|
4.8
|
0.1
|
1.0
|
|
O6
|
D:CAP1001
|
4.8
|
0.7
|
1.0
|
|
CB
|
D:GLU206
|
4.8
|
0.1
|
1.0
|
|
C4
|
D:CAP1001
|
4.8
|
0.4
|
1.0
|
|
CE
|
D:LYS179
|
4.8
|
0.4
|
1.0
|
|
CB
|
D:THR175
|
4.9
|
0.0
|
1.0
|
|
C1
|
D:CAP1001
|
4.9
|
0.9
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 5nv3
Go back to
Magnesium Binding Sites List in 5nv3
Magnesium binding site 5 out
of 8 in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1002
b:0.1
occ:1.00
|
OQ1
|
E:KCX203
|
2.2
|
0.7
|
1.0
|
|
OE1
|
E:GLU206
|
2.3
|
0.8
|
1.0
|
|
O3
|
E:CAP1001
|
2.6
|
1.0
|
1.0
|
|
O2
|
E:CAP1001
|
2.7
|
0.5
|
1.0
|
|
O6
|
E:CAP1001
|
2.8
|
0.7
|
1.0
|
|
OD2
|
E:ASP205
|
2.9
|
0.5
|
1.0
|
|
CG
|
E:ASP205
|
3.4
|
1.0
|
1.0
|
|
CX
|
E:KCX203
|
3.4
|
0.3
|
1.0
|
|
CD
|
E:GLU206
|
3.4
|
0.5
|
1.0
|
|
C2
|
E:CAP1001
|
3.5
|
0.9
|
1.0
|
|
C
|
E:CAP1001
|
3.6
|
0.8
|
1.0
|
|
C3
|
E:CAP1001
|
3.6
|
0.2
|
1.0
|
|
NZ
|
E:LYS179
|
3.7
|
0.1
|
1.0
|
|
OD1
|
E:ASP205
|
3.7
|
0.4
|
1.0
|
|
OQ2
|
E:KCX203
|
3.8
|
0.2
|
1.0
|
|
OE2
|
E:GLU206
|
3.9
|
0.5
|
1.0
|
|
CG2
|
E:THR175
|
3.9
|
0.4
|
1.0
|
|
NE2
|
E:HIS295
|
4.0
|
0.7
|
1.0
|
|
N
|
E:GLU206
|
4.0
|
0.8
|
1.0
|
|
CA
|
E:ASP205
|
4.2
|
0.7
|
1.0
|
|
CB
|
E:ASP205
|
4.3
|
0.8
|
1.0
|
|
NZ
|
E:KCX203
|
4.4
|
0.5
|
1.0
|
|
ND2
|
A:ASN125
|
4.5
|
0.7
|
1.0
|
|
CE1
|
E:HIS295
|
4.6
|
0.4
|
1.0
|
|
C
|
E:ASP205
|
4.6
|
0.7
|
1.0
|
|
CG
|
E:GLU206
|
4.7
|
0.4
|
1.0
|
|
NZ
|
E:LYS177
|
4.7
|
0.4
|
1.0
|
|
OG1
|
E:THR175
|
4.8
|
0.2
|
1.0
|
|
CB
|
E:GLU206
|
4.8
|
0.4
|
1.0
|
|
CD2
|
E:HIS295
|
4.8
|
0.4
|
1.0
|
|
C4
|
E:CAP1001
|
4.8
|
0.3
|
1.0
|
|
O7
|
E:CAP1001
|
4.8
|
0.5
|
1.0
|
|
CE
|
E:LYS179
|
4.8
|
0.7
|
1.0
|
|
CB
|
E:THR175
|
4.9
|
0.2
|
1.0
|
|
C1
|
E:CAP1001
|
4.9
|
0.5
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 5nv3
Go back to
Magnesium Binding Sites List in 5nv3
Magnesium binding site 6 out
of 8 in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1002
b:0.6
occ:1.00
|
OQ1
|
F:KCX203
|
2.2
|
0.1
|
1.0
|
|
OE1
|
F:GLU206
|
2.4
|
0.7
|
1.0
|
|
O3
|
F:CAP1001
|
2.6
|
0.3
|
1.0
|
|
O6
|
F:CAP1001
|
2.8
|
0.4
|
1.0
|
|
O2
|
F:CAP1001
|
2.8
|
1.0
|
1.0
|
|
OD2
|
F:ASP205
|
2.9
|
0.8
|
1.0
|
|
CG
|
F:ASP205
|
3.4
|
0.5
|
1.0
|
|
CX
|
F:KCX203
|
3.4
|
0.2
|
1.0
|
|
CD
|
F:GLU206
|
3.4
|
0.2
|
1.0
|
|
C2
|
F:CAP1001
|
3.5
|
0.9
|
1.0
|
|
C
|
F:CAP1001
|
3.5
|
0.0
|
1.0
|
|
C3
|
F:CAP1001
|
3.6
|
0.8
|
1.0
|
|
NZ
|
F:LYS179
|
3.7
|
0.7
|
1.0
|
|
OD1
|
F:ASP205
|
3.7
|
0.1
|
1.0
|
|
OQ2
|
F:KCX203
|
3.9
|
0.7
|
1.0
|
|
OE2
|
F:GLU206
|
3.9
|
0.3
|
1.0
|
|
CG2
|
F:THR175
|
3.9
|
0.2
|
1.0
|
|
NE2
|
F:HIS295
|
4.0
|
0.0
|
1.0
|
|
N
|
F:GLU206
|
4.0
|
0.1
|
1.0
|
|
CA
|
F:ASP205
|
4.1
|
0.2
|
1.0
|
|
CB
|
F:ASP205
|
4.3
|
0.8
|
1.0
|
|
NZ
|
F:KCX203
|
4.4
|
0.7
|
1.0
|
|
ND2
|
B:ASN125
|
4.5
|
0.4
|
1.0
|
|
CE1
|
F:HIS295
|
4.6
|
0.7
|
1.0
|
|
C
|
F:ASP205
|
4.6
|
0.7
|
1.0
|
|
CG
|
F:GLU206
|
4.7
|
0.0
|
1.0
|
|
NZ
|
F:LYS177
|
4.7
|
0.5
|
1.0
|
|
O7
|
F:CAP1001
|
4.8
|
0.4
|
1.0
|
|
OG1
|
F:THR175
|
4.8
|
0.3
|
1.0
|
|
CB
|
F:GLU206
|
4.8
|
0.9
|
1.0
|
|
CD2
|
F:HIS295
|
4.8
|
0.9
|
1.0
|
|
C4
|
F:CAP1001
|
4.8
|
0.7
|
1.0
|
|
CE
|
F:LYS179
|
4.9
|
0.3
|
1.0
|
|
CB
|
F:THR175
|
4.9
|
0.9
|
1.0
|
|
C1
|
F:CAP1001
|
4.9
|
0.1
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 5nv3
Go back to
Magnesium Binding Sites List in 5nv3
Magnesium binding site 7 out
of 8 in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1002
b:0.2
occ:1.00
|
OQ1
|
G:KCX203
|
2.2
|
0.9
|
1.0
|
|
OE1
|
G:GLU206
|
2.3
|
0.9
|
1.0
|
|
O3
|
G:CAP1001
|
2.6
|
0.0
|
1.0
|
|
O2
|
G:CAP1001
|
2.7
|
0.1
|
1.0
|
|
O6
|
G:CAP1001
|
2.9
|
0.3
|
1.0
|
|
OD2
|
G:ASP205
|
2.9
|
0.2
|
1.0
|
|
CG
|
G:ASP205
|
3.4
|
0.9
|
1.0
|
|
CX
|
G:KCX203
|
3.4
|
0.7
|
1.0
|
|
CD
|
G:GLU206
|
3.4
|
0.8
|
1.0
|
|
C2
|
G:CAP1001
|
3.5
|
0.4
|
1.0
|
|
C
|
G:CAP1001
|
3.6
|
0.1
|
1.0
|
|
C3
|
G:CAP1001
|
3.6
|
0.8
|
1.0
|
|
NZ
|
G:LYS179
|
3.7
|
0.5
|
1.0
|
|
OD1
|
G:ASP205
|
3.7
|
0.4
|
1.0
|
|
OQ2
|
G:KCX203
|
3.8
|
0.1
|
1.0
|
|
OE2
|
G:GLU206
|
3.9
|
0.9
|
1.0
|
|
CG2
|
G:THR175
|
3.9
|
0.5
|
1.0
|
|
NE2
|
G:HIS295
|
4.0
|
0.2
|
1.0
|
|
N
|
G:GLU206
|
4.0
|
0.3
|
1.0
|
|
CA
|
G:ASP205
|
4.1
|
0.4
|
1.0
|
|
CB
|
G:ASP205
|
4.3
|
0.1
|
1.0
|
|
NZ
|
G:KCX203
|
4.4
|
0.8
|
1.0
|
|
ND2
|
C:ASN125
|
4.5
|
0.5
|
1.0
|
|
CE1
|
G:HIS295
|
4.6
|
0.4
|
1.0
|
|
C
|
G:ASP205
|
4.6
|
0.5
|
1.0
|
|
CG
|
G:GLU206
|
4.7
|
0.4
|
1.0
|
|
NZ
|
G:LYS177
|
4.7
|
0.7
|
1.0
|
|
OG1
|
G:THR175
|
4.8
|
1.0
|
1.0
|
|
CD2
|
G:HIS295
|
4.8
|
0.2
|
1.0
|
|
CB
|
G:GLU206
|
4.8
|
0.6
|
1.0
|
|
C4
|
G:CAP1001
|
4.8
|
0.8
|
1.0
|
|
O7
|
G:CAP1001
|
4.8
|
0.6
|
1.0
|
|
CE
|
G:LYS179
|
4.9
|
0.0
|
1.0
|
|
CB
|
G:THR175
|
4.9
|
0.9
|
1.0
|
|
C1
|
G:CAP1001
|
4.9
|
0.2
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 5nv3
Go back to
Magnesium Binding Sites List in 5nv3
Magnesium binding site 8 out
of 8 in the Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Rubisco From Rhodobacter Sphaeroides in Complex with Cabp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg1002
b:0.7
occ:1.00
|
OQ1
|
H:KCX203
|
2.2
|
0.6
|
1.0
|
|
OE1
|
H:GLU206
|
2.3
|
0.2
|
1.0
|
|
O3
|
H:CAP1001
|
2.6
|
0.6
|
1.0
|
|
O6
|
H:CAP1001
|
2.8
|
0.8
|
1.0
|
|
O2
|
H:CAP1001
|
2.8
|
0.8
|
1.0
|
|
OD2
|
H:ASP205
|
2.9
|
0.6
|
1.0
|
|
CG
|
H:ASP205
|
3.4
|
0.2
|
1.0
|
|
CX
|
H:KCX203
|
3.4
|
0.3
|
1.0
|
|
CD
|
H:GLU206
|
3.4
|
0.1
|
1.0
|
|
C2
|
H:CAP1001
|
3.5
|
0.1
|
1.0
|
|
C
|
H:CAP1001
|
3.5
|
0.4
|
1.0
|
|
C3
|
H:CAP1001
|
3.6
|
0.5
|
1.0
|
|
NZ
|
H:LYS179
|
3.6
|
0.1
|
1.0
|
|
OD1
|
H:ASP205
|
3.7
|
0.6
|
1.0
|
|
OQ2
|
H:KCX203
|
3.9
|
0.2
|
1.0
|
|
OE2
|
H:GLU206
|
3.9
|
0.0
|
1.0
|
|
CG2
|
H:THR175
|
3.9
|
0.5
|
1.0
|
|
NE2
|
H:HIS295
|
4.0
|
0.7
|
1.0
|
|
N
|
H:GLU206
|
4.0
|
0.0
|
1.0
|
|
CA
|
H:ASP205
|
4.1
|
0.5
|
1.0
|
|
CB
|
H:ASP205
|
4.3
|
0.8
|
1.0
|
|
NZ
|
H:KCX203
|
4.4
|
0.8
|
1.0
|
|
ND2
|
D:ASN125
|
4.5
|
0.1
|
1.0
|
|
CE1
|
H:HIS295
|
4.6
|
0.8
|
1.0
|
|
C
|
H:ASP205
|
4.6
|
0.1
|
1.0
|
|
NZ
|
H:LYS177
|
4.7
|
0.0
|
1.0
|
|
CG
|
H:GLU206
|
4.7
|
0.1
|
1.0
|
|
O7
|
H:CAP1001
|
4.8
|
1.0
|
1.0
|
|
OG1
|
H:THR175
|
4.8
|
0.2
|
1.0
|
|
CD2
|
H:HIS295
|
4.8
|
0.6
|
1.0
|
|
CB
|
H:GLU206
|
4.8
|
0.0
|
1.0
|
|
C4
|
H:CAP1001
|
4.8
|
0.7
|
1.0
|
|
CE
|
H:LYS179
|
4.9
|
0.4
|
1.0
|
|
CB
|
H:THR175
|
4.9
|
0.6
|
1.0
|
|
C1
|
H:CAP1001
|
4.9
|
0.8
|
1.0
|
|
Reference:
J.Y.Bhat,
G.Milicic,
G.Thieulin-Pardo,
A.Bracher,
A.Maxwell,
S.Ciniawsky,
O.Mueller-Cajar,
J.R.Engen,
F.U.Hartl,
P.Wendler,
M.Hayer-Hartl.
Mechanism of Enzyme Repair By the Aaa(+) Chaperone Rubisco Activase. Mol. Cell V. 67 744 2017.
ISSN: ISSN 1097-4164
PubMed: 28803776
DOI: 10.1016/J.MOLCEL.2017.07.004
Page generated: Mon Dec 14 20:57:05 2020
|
