Atomistry » Magnesium » PDB 5o60-5odo » 5o6r
Atomistry »
  Magnesium »
    PDB 5o60-5odo »
      5o6r »

Magnesium in PDB 5o6r: Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride

Enzymatic activity of Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride

All present enzymatic activity of Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride:
5.4.2.6;

Protein crystallography data

The structure of Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride, PDB code: 5o6r was solved by M.W.Bowler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.36
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.300, 54.900, 107.560, 90.00, 90.00, 90.00
R / Rfree (%) 11.5 / 14.9

Other elements in 5o6r:

The structure of Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride (pdb code 5o6r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride, PDB code: 5o6r:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5o6r

Go back to Magnesium Binding Sites List in 5o6r
Magnesium binding site 1 out of 2 in the Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:8.2
occ:1.00
 F2 A:ALF303 2.0 6.3 0.8
OD2 A:ASP8 2.0 6.9 1.0
O A:ASN10 2.1 8.2 1.0
OD1 A:ASP170 2.1 8.4 1.0
O A:HOH576 2.1 9.5 1.0
O A:HOH443 2.1 9.5 1.0
CG A:ASP8 3.1 6.8 1.0
CG A:ASP170 3.1 8.4 1.0
C A:ASN10 3.2 6.7 1.0
OD1 A:ASP8 3.5 6.8 1.0
AL A:ALF303 3.5 6.7 0.8
F4 A:ALF303 3.5 8.7 0.8
OD2 A:ASP170 3.5 10.7 1.0
O A:HOH656 3.9 11.1 1.0
OE1 A:GLU169 3.9 10.4 1.0
CA A:ASN10 4.0 6.9 1.0
N A:ASN10 4.1 6.2 1.0
CB A:ASN10 4.2 7.1 1.0
N A:GLY11 4.3 7.1 1.0
F3 A:ALF303 4.3 7.0 0.8
O A:HOH505 4.3 25.2 1.0
O A:HOH407 4.4 10.1 1.0
CB A:ASP170 4.4 7.2 1.0
CB A:ASP8 4.4 6.4 1.0
N A:ASP170 4.5 7.0 1.0
CA A:GLY11 4.5 7.6 1.0
CD A:GLU169 4.7 9.1 1.0
CB A:SER171 4.7 10.3 1.0
OG A:SER171 4.8 12.5 1.0
OE2 A:GLU169 4.8 10.4 1.0
CA A:ASP170 4.8 7.4 1.0
N A:SER171 4.9 8.0 1.0
C A:LEU9 4.9 6.6 1.0
C A:ASP170 5.0 8.1 1.0

Magnesium binding site 2 out of 2 in 5o6r

Go back to Magnesium Binding Sites List in 5o6r
Magnesium binding site 2 out of 2 in the Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Beta-Phosphoglucomutase D10N Mutant in Complex with Glucose-1-Phosphate and Aluminium Tetrafluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:24.6
occ:1.00
 O A:HOH555 1.9 20.5 1.0
O A:HOH530 2.0 27.4 1.0
O A:HOH723 2.1 27.3 1.0
O A:HOH634 2.1 19.9 1.0
O A:HOH737 3.0 25.0 1.0
O A:HOH473 3.3 32.5 1.0
O A:HOH497 3.9 19.5 1.0
O A:HOH444 4.2 14.9 1.0
O A:VAL188 4.3 9.8 1.0
O A:HOH718 4.4 39.8 1.0
O A:ASP170 4.4 10.3 1.0
OD2 A:ASP170 4.5 10.7 1.0
CA A:GLY189 4.5 10.0 1.0
CB A:ASP170 4.6 7.2 1.0
O A:HOH498 4.7 21.6 1.0

Reference:

L.A.Johnson, A.J.Robertson, N.J.Baxter, C.R.Trevitt, C.Bisson, Y.Jin, H.P.Wood, A.M.Hounslow, M.J.Cliff, G.M.Blackburn, M.W.Bowler, J.P.Waltho. Van Der Waals Contact Between Nucleophile and Transferring Phosphorus Is Insufficient to Achieve Enzyme Transition-State Architecture Acs Catalysis 2018.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.8B01612
Page generated: Mon Dec 14 20:58:07 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy