Magnesium in PDB 5o8z: Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator.

The structure of Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator., PDB code: 5o8z was solved by P.Casino, A.Marina, L.Miguel-Romero, J.Huesa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.69 / 2.10
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	37.392, 54.266, 54.986, 62.60, 81.61, 79.66
R / Rfree (%)	21.3 / 26.5

The structure of Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator. also contains other interesting chemical elements:

Fluorine

(F)

6 atoms

The binding sites of Magnesium atom in the Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator. (pdb code 5o8z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator., PDB code: 5o8z:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:30.6 occ:1.00 O A:HOH428 1.9 29.1 1.0 F1 A:BEF301 2.0 28.8 1.0 O A:SER58 2.0 31.3 1.0 OD1 A:ASP11 2.1 29.2 1.0 O A:HOH418 2.1 26.0 1.0 OD2 A:ASP56 2.2 27.5 1.0 CG A:ASP56 3.2 26.6 1.0 CG A:ASP11 3.2 30.2 1.0 BE A:BEF301 3.2 28.3 1.0 C A:SER58 3.3 32.6 1.0 OD2 A:ASP11 3.5 33.0 1.0 OD1 A:ASP56 3.5 25.9 1.0 CB A:SER58 4.0 34.6 1.0 CA A:SER58 4.1 33.6 1.0 OD1 A:ASP10 4.2 27.4 1.0 F2 A:BEF301 4.2 28.4 1.0 F3 A:BEF301 4.2 29.2 1.0 N A:MET59 4.3 33.3 1.0 N A:SER58 4.3 33.3 1.0 CB A:ASP56 4.4 27.2 1.0 N A:ASP11 4.4 26.4 1.0 CB A:ASP11 4.5 29.2 1.0 CA A:MET59 4.5 34.3 1.0 NZ A:LYS109 4.5 28.7 1.0 CG A:MET59 4.5 37.6 1.0 CE A:MET88 4.6 38.9 1.0 OD2 A:ASP10 4.6 28.4 1.0 CG A:ASP10 4.6 27.1 1.0 CE1 A:HIS12 4.7 27.0 1.0 NE2 A:HIS12 4.8 27.5 1.0 CA A:ASP11 5.0 27.7 1.0 ND1 A:HIS12 5.0 26.7 1.0

Magnesium binding site 2 out of 2 in the Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Conformational Dynamism For Dna Interaction in Salmonella Typhimurium Rcsb Response Regulator. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:32.3 occ:1.00 F1 B:BEF301 2.0 27.4 1.0 O B:HOH420 2.0 31.3 1.0 O B:HOH432 2.1 26.4 1.0 OD2 B:ASP56 2.1 27.4 1.0 OD1 B:ASP11 2.1 26.8 1.0 O B:SER58 2.2 30.5 1.0 CG B:ASP56 3.1 26.7 1.0 BE B:BEF301 3.1 27.6 1.0 CG B:ASP11 3.2 26.6 1.0 C B:SER58 3.4 31.5 1.0 OD1 B:ASP56 3.5 25.6 1.0 OD2 B:ASP11 3.6 27.4 1.0 OD1 B:ASP10 4.0 27.6 1.0 CB B:SER58 4.0 33.9 1.0 F3 B:BEF301 4.0 26.8 1.0 CA B:SER58 4.1 32.5 1.0 F2 B:BEF301 4.2 28.1 1.0 N B:SER58 4.3 31.2 1.0 NZ B:LYS109 4.3 24.6 1.0 CE B:MET88 4.3 37.0 1.0 CB B:ASP56 4.4 27.0 1.0 N B:ASP11 4.4 25.6 1.0 N B:MET59 4.5 32.0 1.0 CB B:ASP11 4.5 26.9 1.0 CG B:ASP10 4.5 27.0 1.0 CE1 B:HIS12 4.6 26.5 1.0 CG B:MET59 4.6 38.2 1.0 OD2 B:ASP10 4.6 26.0 1.0 O B:HOH427 4.6 47.5 1.0 ND1 B:HIS12 4.7 26.7 1.0 CA B:MET59 4.8 34.1 1.0 NE2 B:HIS12 4.8 27.3 1.0 CA B:ASP11 4.9 26.5 1.0

P.Casino, L.Miguel-Romero, J.Huesa, P.Garcia, F.Garcia-Del Portillo, A.Marina. Conformational Dynamism For Dna Interaction in the Salmonella Rcsb Response Regulator. Nucleic Acids Res. V. 46 456 2018.
ISSN: ESSN 1362-4962
PubMed: 29186528
DOI: 10.1093/NAR/GKX1164