Atomistry » Magnesium » PDB 5o60-5odo » 5oas
Atomistry »
  Magnesium »
    PDB 5o60-5odo »
      5oas »

Magnesium in PDB 5oas: Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form.

Enzymatic activity of Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form.

All present enzymatic activity of Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form.:
2.3.3.9;

Protein crystallography data

The structure of Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form., PDB code: 5oas was solved by A.C.Mcvey, M.Welch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.93 / 1.62
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.171, 81.197, 137.574, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 19.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form. (pdb code 5oas). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form., PDB code: 5oas:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5oas

Go back to Magnesium Binding Sites List in 5oas
Magnesium binding site 1 out of 2 in the Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg820

b:36.5
occ:1.00
OE2 A:GLU432 2.7 18.4 1.0
OE1 A:GLU274 2.8 19.5 1.0
OD2 A:ASP460 3.1 26.5 1.0
OE1 A:GLU432 3.2 26.1 1.0
CD A:GLU432 3.3 21.1 1.0
NH1 A:ARG340 3.3 21.7 1.0
O2 A:EDO808 3.3 45.5 1.0
NZ A:LYS397 3.3 21.2 1.0
OE2 A:GLU274 3.4 19.1 1.0
CB A:PRO396 3.4 15.3 1.0
CD A:GLU274 3.5 19.8 1.0
O A:HOH969 3.6 40.9 1.0
OD2 A:ASP275 3.9 27.4 1.0
CZ A:ARG340 4.0 15.7 1.0
CG A:ASP275 4.2 22.9 1.0
CG A:LYS397 4.3 17.7 1.0
CG A:ASP460 4.4 23.7 1.0
C2 A:EDO808 4.4 41.9 1.0
CG A:PRO396 4.5 15.6 1.0
CA A:PRO396 4.6 14.3 1.0
CE A:LYS397 4.6 19.9 1.0
NH2 A:ARG340 4.6 17.3 1.0
NE A:ARG340 4.6 14.4 1.0
OD1 A:ASP275 4.6 22.0 1.0
CD A:ARG340 4.7 15.0 1.0
CG A:GLU432 4.7 15.5 1.0
CB A:ASP275 4.7 18.7 1.0
CG A:MET430 4.7 16.4 1.0
CD A:LYS397 4.8 18.4 1.0
N A:LYS397 4.8 15.5 1.0
CG A:GLU274 5.0 18.3 1.0

Magnesium binding site 2 out of 2 in 5oas

Go back to Magnesium Binding Sites List in 5oas
Magnesium binding site 2 out of 2 in the Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Apo Form. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg821

b:36.9
occ:1.00
C2 A:GOL803 2.7 40.6 1.0
C3 A:GOL803 2.9 35.6 1.0
OD1 A:ASP318 2.9 17.3 1.0
N A:ARG334 2.9 14.7 1.0
N A:GLY333 3.0 15.8 1.0
CB A:HIS332 3.3 17.9 1.0
O2 A:GOL803 3.3 46.9 1.0
CZ A:ARG334 3.3 21.5 1.0
NH2 A:ARG334 3.4 18.9 1.0
CA A:HIS332 3.4 17.1 1.0
C A:HIS332 3.4 15.2 1.0
NH2 A:ARG387 3.5 35.3 1.0
CB A:ARG334 3.5 14.3 1.0
NH1 A:ARG334 3.5 19.1 1.0
CA A:ARG334 3.7 13.6 1.0
O A:ARG334 3.7 15.3 1.0
C A:GLY333 3.8 14.6 1.0
CA A:GLY333 3.8 16.9 1.0
NE A:ARG334 3.8 15.3 1.0
C1 A:GOL803 3.9 39.1 1.0
CG A:HIS332 4.0 25.9 1.0
CG A:ARG334 4.0 17.3 1.0
CG A:ASP318 4.0 21.0 1.0
O3 A:GOL803 4.1 38.1 1.0
C A:ARG334 4.1 13.8 1.0
O A:HIS332 4.4 15.4 1.0
CD2 A:HIS332 4.5 30.4 1.0
OD2 A:ASP318 4.6 22.8 1.0
CD A:ARG334 4.6 16.3 1.0
O A:HOH915 4.7 27.1 1.0
CZ A:ARG387 4.7 35.4 1.0
O A:LYS384 4.8 15.7 1.0
ND1 A:HIS332 4.8 29.0 1.0
N A:HIS332 4.9 16.6 1.0
O1 A:GOL803 4.9 41.4 1.0
O A:GLY333 5.0 15.0 1.0

Reference:

A.C.Mcvey, P.Medarametla, X.Chee, S.Bartlett, A.Poso, D.R.Spring, T.Rahman, M.Welch. Structural and Functional Characterization of Malate Synthase G From Opportunistic Pathogen Pseudomonas Aeruginosa. Biochemistry V. 56 5539 2017.
ISSN: ISSN 1520-4995
PubMed: 28985053
DOI: 10.1021/ACS.BIOCHEM.7B00852
Page generated: Mon Dec 14 20:58:34 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy