Magnesium in PDB 5oed: Human RAB32:Gdp in Complex with Salmonella Gtge C45A Mutant

The structure of Human RAB32:Gdp in Complex with Salmonella Gtge C45A Mutant, PDB code: 5oed was solved by R.Wachtel, B.Braeuning, S.L.Mader, F.Ecker, V.R.I.Kaila, M.Groll, A.Itzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.90
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	67.410, 67.410, 427.340, 90.00, 90.00, 120.00
R / Rfree (%)	20.1 / 24

The binding sites of Magnesium atom in the Human RAB32:Gdp in Complex with Salmonella Gtge C45A Mutant (pdb code 5oed). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human RAB32:Gdp in Complex with Salmonella Gtge C45A Mutant, PDB code: 5oed:

Magnesium binding site 1 out of 1 in the Human RAB32:Gdp in Complex with Salmonella Gtge C45A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human RAB32:Gdp in Complex with Salmonella Gtge C45A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:71.7 occ:1.00 O2B B:GDP900 1.9 83.2 1.0 OE2 A:GLU148 2.0 0.9 1.0 O B:HOH1002 2.0 82.6 1.0 OG1 B:THR39 2.1 80.0 1.0 O A:HOH1001 2.1 77.6 1.0 O B:HOH1001 2.2 68.9 1.0 CD A:GLU148 3.1 0.9 1.0 PB B:GDP900 3.2 88.6 1.0 H B:THR39 3.4 83.8 1.0 CB B:THR39 3.4 67.3 1.0 O3B B:GDP900 3.5 86.5 1.0 HG3 A:GLU148 3.6 0.8 1.0 HB B:THR39 3.6 80.8 1.0 CG A:GLU148 3.7 91.5 1.0 HG2 A:GLU148 3.8 0.8 1.0 OD2 B:ASP81 3.8 71.2 1.0 HB2 B:LYS38 3.9 0.8 1.0 HE2 B:LYS38 3.9 0.5 1.0 O1B B:GDP900 4.0 91.4 1.0 N B:THR39 4.0 69.9 1.0 HA B:ALA83 4.0 87.2 1.0 OD1 B:ASP81 4.1 71.1 1.0 OE1 A:GLU148 4.1 0.9 1.0 OE1 B:GLU86 4.2 98.1 1.0 O2A B:GDP900 4.2 99.7 1.0 OE2 B:GLU86 4.2 93.0 1.0 HG21 B:THR39 4.3 71.1 1.0 CA B:THR39 4.3 60.0 1.0 CG B:ASP81 4.3 68.9 1.0 O3A B:GDP900 4.4 95.6 1.0 CG2 B:THR39 4.4 59.2 1.0 HG23 B:THR39 4.6 71.1 1.0 HA B:THR39 4.6 72.0 1.0 CD B:GLU86 4.6 96.8 1.0 PA B:GDP900 4.7 0.9 1.0 H B:ALA83 4.7 84.8 1.0 HZ1 B:LYS38 4.7 0.4 1.0 O1A B:GDP900 4.8 0.3 1.0 CE B:LYS38 4.8 87.9 1.0 CB B:LYS38 4.8 87.4 1.0 HZ3 B:LYS38 4.9 0.4 1.0 CA B:ALA83 4.9 72.7 1.0

R.Wachtel, B.Brauning, S.L.Mader, F.Ecker, V.R.I.Kaila, M.Groll, A.Itzen. The Protease Gtge From Salmonella Exclusively Targets Inactive Rab Gtpases. Nat Commun V. 9 44 2018.
ISSN: ESSN 2041-1723
PubMed: 29298974
DOI: 10.1038/S41467-017-02110-1