Magnesium in PDB 5oeu: The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation.

The structure of The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation., PDB code: 5oeu was solved by C.J.Lilley, A.Maqbool, D.Wu, H.B.Yusup, L.M.Jones, P.R.J.Birch, M.J.Banfield, P.E.Urwin, S.Eves-Van Den Akker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.57
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	80.270, 121.079, 128.338, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 24.7

The binding sites of Magnesium atom in the The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation. (pdb code 5oeu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation., PDB code: 5oeu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:66.7 occ:1.00 O2B A:ADP601 2.4 84.5 1.0 OE1 A:GLU175 2.6 66.8 1.0 OE1 A:GLU459 3.0 54.3 1.0 O2A A:ADP601 3.0 69.2 1.0 OD2 A:ASP154 3.1 46.9 1.0 PB A:ADP601 3.9 88.5 1.0 O3' A:ADP601 3.9 66.9 1.0 CD A:GLU175 3.9 66.2 1.0 CG A:ASP154 4.0 44.8 1.0 CD A:GLU459 4.2 55.1 1.0 PA A:ADP601 4.3 68.3 1.0 NH2 A:ARG152 4.4 62.3 1.0 CB A:GLU175 4.4 57.9 1.0 O3A A:ADP601 4.4 79.4 1.0 CB A:ASP154 4.5 43.6 1.0 O1B A:ADP601 4.6 88.2 1.0 OE2 A:GLU459 4.7 60.9 1.0 C3' A:ADP601 4.7 66.0 1.0 ND2 A:ASN177 4.7 59.3 1.0 OE2 A:GLU175 4.7 71.3 1.0 CG A:GLU175 4.8 61.8 1.0 CG2 A:VAL174 4.9 54.6 1.0 C5' A:ADP601 4.9 64.9 1.0 O3B A:ADP601 4.9 87.8 1.0 OD1 A:ASP154 4.9 44.5 1.0

Magnesium binding site 2 out of 5 in the The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:56.6 occ:1.00 O A:SER335 2.5 46.0 1.0 O A:VAL176 2.6 50.6 1.0 O A:HOH719 2.7 50.9 1.0 OE2 A:GLU175 2.9 71.3 1.0 CG A:GLU175 3.3 61.8 1.0 CD A:GLU175 3.5 66.2 1.0 C A:SER335 3.7 46.7 1.0 NZ A:LYS337 3.7 60.3 1.0 C A:VAL176 3.8 49.2 1.0 OD1 A:ASN177 4.3 59.5 1.0 OG A:SER335 4.3 46.4 1.0 N A:VAL176 4.3 48.8 1.0 CB A:SER335 4.3 45.3 1.0 CA A:ASN177 4.6 53.3 1.0 N A:ASN177 4.6 51.6 1.0 N A:SER336 4.6 47.6 1.0 CA A:SER335 4.6 45.4 1.0 CA A:SER336 4.6 46.8 1.0 CE A:LYS337 4.7 59.8 1.0 CB A:GLU175 4.7 57.9 1.0 CA A:VAL176 4.7 48.2 1.0 CG A:ASN177 4.7 58.1 1.0 C A:SER336 4.7 47.5 1.0 OE1 A:GLU175 4.8 66.8 1.0 N A:LYS337 4.9 49.0 1.0 CD A:LYS337 4.9 58.1 1.0

Magnesium binding site 3 out of 5 in the The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg604 b:53.5 occ:1.00 OD2 A:ASP360 2.6 54.9 1.0 CG A:ASP360 3.5 54.3 1.0 OD1 A:ASP360 3.7 53.1 1.0 O A:THR357 4.4 60.5 1.0 NZ A:LYS361 4.6 51.8 1.0 CB A:ASP360 4.9 54.3 1.0

Magnesium binding site 4 out of 5 in the The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:73.6 occ:1.00 O1B C:ADP601 2.1 0.2 1.0 O1A C:ADP601 2.8 0.6 1.0 OE1 C:GLU175 2.9 77.4 1.0 OE1 C:GLU459 3.2 68.2 1.0 OD2 C:ASP154 3.5 51.3 1.0 PB C:ADP601 3.6 0.5 1.0 O3' C:ADP601 3.7 89.5 1.0 PA C:ADP601 4.0 0.8 1.0 CD C:GLU175 4.1 70.9 1.0 O3A C:ADP601 4.1 0.2 1.0 C5' C:ADP601 4.3 95.0 1.0 C3' C:ADP601 4.4 94.6 1.0 CD C:GLU459 4.4 63.3 1.0 O2B C:ADP601 4.4 0.3 1.0 CG C:ASP154 4.5 47.8 1.0 NH2 C:ARG152 4.5 64.5 1.0 O3B C:ADP601 4.5 0.8 1.0 O5' C:ADP601 4.6 98.2 1.0 CB C:GLU175 4.8 60.6 1.0 OE2 C:GLU175 4.8 76.9 1.0 OE2 C:GLU459 4.9 66.1 1.0 C4' C:ADP601 4.9 95.5 1.0 CB C:ASP154 5.0 46.5 1.0 ND2 C:ASN177 5.0 61.1 1.0

Magnesium binding site 5 out of 5 in the The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of A Glutathione Synthetase Like-Effector (GSS22) From Globodera Pallida in Adp-Bound Closed Conformation. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg603 b:70.3 occ:1.00 O C:SER335 2.2 49.8 1.0 O C:HOH724 2.5 46.4 1.0 O C:VAL176 2.7 48.7 1.0 O C:HOH721 2.9 55.2 1.0 OE2 C:GLU175 3.1 76.9 1.0 C C:SER335 3.4 49.5 1.0 CG C:GLU175 3.5 65.1 1.0 NZ C:LYS337 3.7 67.9 1.0 CD C:GLU175 3.8 70.9 1.0 C C:VAL176 3.9 46.5 1.0 OG C:SER335 4.1 48.1 1.0 CB C:SER335 4.1 49.4 1.0 N C:SER336 4.3 50.4 1.0 CA C:SER335 4.4 49.3 1.0 CA C:SER336 4.4 52.0 1.0 OD1 C:ASN177 4.5 61.4 1.0 N C:VAL176 4.5 48.4 1.0 CE C:LYS337 4.5 68.0 1.0 C C:SER336 4.5 53.6 1.0 CA C:ASN177 4.7 52.0 1.0 N C:ASN177 4.7 48.8 1.0 N C:LYS337 4.7 56.5 1.0 CA C:VAL176 4.8 46.6 1.0 O C:HOH711 4.8 52.8 1.0 CG C:ASN177 4.9 58.8 1.0 CB C:GLU175 4.9 60.6 1.0 CD1 C:LEU303 5.0 50.3 1.0 O C:SER336 5.0 54.0 1.0 CD C:LYS337 5.0 66.5 1.0

C.J.Lilley, A.Maqbool, D.Wu, H.B.Yusup, L.M.Jones, P.R.J.Birch, M.J.Banfield, P.E.Urwin, S.Eves-Van Den Akker. Effector Gene Birth in Plant Parasitic Nematodes: Neofunctionalization of A Housekeeping Glutathione Synthetase Gene. Plos Genet. V. 14 07310 2018.
ISSN: ESSN 1553-7404
PubMed: 29641602
DOI: 10.1371/JOURNAL.PGEN.1007310