Magnesium in PDB 5ogw: Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution

The structure of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution also contains other interesting chemical elements:

Bromine

(Br)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution (pdb code 5ogw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution, PDB code: 5ogw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:60.2 occ:1.00 O2B A:ADP401 2.1 0.2 1.0 O3B A:ADP401 2.6 0.3 1.0 PB A:ADP401 2.7 0.3 1.0 O3A A:ADP401 3.3 0.1 1.0 OE1 A:GLN140 3.6 0.2 1.0 NE2 A:GLN140 3.7 0.8 1.0 CD A:GLN140 3.8 0.9 1.0 CG2 A:VAL342 4.2 0.1 1.0 O1B A:ADP401 4.2 1.0 1.0 O2A A:ADP401 4.4 88.0 1.0 OD2 A:ASP157 4.4 0.8 1.0 PA A:ADP401 4.5 96.0 1.0 CA A:GLY159 4.6 98.3 1.0 CA A:GLY304 4.7 0.9 1.0 CB A:VAL342 4.8 0.1 1.0 N A:GLY159 4.9 99.1 1.0 CG A:GLN140 4.9 0.2 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:0.3 occ:1.00 O2B B:ADP401 2.1 0.2 1.0 O3B B:ADP401 2.6 1.0 1.0 PB B:ADP401 2.8 0.2 1.0 O3A B:ADP401 3.4 0.9 1.0 OE1 B:GLN140 3.7 0.5 1.0 NE2 B:GLN140 3.7 0.2 1.0 CD B:GLN140 3.8 97.9 1.0 CG2 B:VAL342 4.1 0.5 1.0 O1B B:ADP401 4.2 0.3 1.0 OD2 B:ASP157 4.4 0.5 1.0 O2A B:ADP401 4.4 0.3 1.0 PA B:ADP401 4.5 0.2 1.0 CA B:GLY159 4.6 0.6 1.0 CA B:GLY304 4.7 95.9 1.0 CB B:VAL342 4.8 0.8 1.0 N B:GLY159 4.9 100.0 1.0 CG B:GLN140 4.9 86.8 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:94.7 occ:1.00 O2B C:ADP401 2.1 0.7 1.0 O3B C:ADP401 2.6 0.1 1.0 PB C:ADP401 2.7 0.0 1.0 O3A C:ADP401 3.3 0.6 1.0 OE1 C:GLN140 3.6 0.2 1.0 NE2 C:GLN140 3.7 0.7 1.0 CD C:GLN140 3.8 0.6 1.0 CG2 C:VAL342 4.2 0.9 1.0 O1B C:ADP401 4.2 0.4 1.0 O2A C:ADP401 4.4 0.5 1.0 OD2 C:ASP157 4.4 0.1 1.0 PA C:ADP401 4.5 0.4 1.0 CA C:GLY159 4.5 0.4 1.0 CA C:GLY304 4.7 0.0 1.0 CB C:VAL342 4.8 0.6 1.0 N C:GLY159 4.8 0.5 1.0 CG C:GLN140 5.0 0.2 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:0.5 occ:1.00 O2B D:ADP401 2.2 0.3 1.0 O3B D:ADP401 2.7 0.2 1.0 PB D:ADP401 2.9 0.2 1.0 O3A D:ADP401 3.4 0.3 1.0 OE1 D:GLN140 3.6 0.1 1.0 NE2 D:GLN140 3.7 0.8 1.0 CD D:GLN140 3.8 0.9 1.0 CG2 D:VAL342 4.1 0.8 1.0 OD2 D:ASP157 4.3 0.3 1.0 O1B D:ADP401 4.3 97.6 1.0 O2A D:ADP401 4.5 75.3 1.0 CA D:GLY159 4.5 93.5 1.0 PA D:ADP401 4.6 80.1 1.0 CA D:GLY304 4.6 96.3 1.0 N D:GLY159 4.8 87.8 1.0 CB D:VAL342 4.8 97.4 1.0 CG D:GLN140 4.9 89.8 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:76.5 occ:1.00 O2B E:ADP401 2.1 0.0 1.0 O3B E:ADP401 2.7 0.0 1.0 PB E:ADP401 2.8 0.6 1.0 O3A E:ADP401 3.4 0.6 1.0 OE1 E:GLN140 3.6 1.0 1.0 NE2 E:GLN140 3.6 94.6 1.0 CD E:GLN140 3.8 92.5 1.0 CG2 E:VAL342 4.2 0.9 1.0 O1B E:ADP401 4.2 0.5 1.0 OD2 E:ASP157 4.4 1.0 1.0 O2A E:ADP401 4.5 93.1 1.0 PA E:ADP401 4.5 0.9 1.0 CA E:GLY159 4.5 0.3 1.0 CA E:GLY304 4.7 87.8 1.0 CB E:VAL342 4.8 96.2 1.0 N E:GLY159 4.9 0.8 1.0 CG E:GLN140 4.9 82.2 1.0

S.Pospich, E.P.Kumpula, J.Von Der Ecken, J.Vahokoski, I.Kursula, S.Raunser. Near-Atomic Structure of Jasplakinolide-Stabilized Malaria Parasite F-Actin Reveals the Structural Basis of Filament Instability. Proc. Natl. Acad. Sci. V. 114 10636 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28923924
DOI: 10.1073/PNAS.1707506114