Magnesium in PDB 5oik: Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex

All present enzymatic activity of Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex:
2.7.7.6;

The structure of Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex (pdb code 5oik). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex, PDB code: 5oik:

Magnesium binding site 1 out of 1 in the Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2003 b:0.1 occ:1.00 O3' P:C50 2.1 0.3 1.0 OD1 A:ASP495 2.2 92.9 1.0 OD1 A:ASP497 2.4 92.8 1.0 CG A:ASP495 3.1 92.9 1.0 CG A:ASP497 3.2 92.8 1.0 OD1 A:ASP499 3.3 91.2 1.0 OD2 A:ASP495 3.4 92.9 1.0 OD2 A:ASP497 3.4 92.8 1.0 C3' P:C50 3.5 0.3 1.0 OD2 A:ASP499 3.6 91.2 1.0 CG A:ASP499 3.8 91.2 1.0 O A:ASP495 3.8 84.8 1.0 O A:ASP497 3.9 87.5 1.0 C4' P:C50 4.2 0.3 1.0 O2' P:C50 4.4 0.3 1.0 CB A:ASP495 4.5 92.9 1.0 C2' P:C50 4.5 0.3 1.0 C A:ASP495 4.5 84.8 1.0 N A:ASP497 4.6 87.5 1.0 C5' P:C50 4.6 0.3 1.0 CB A:ASP497 4.6 92.8 1.0 N A:ASP495 4.6 84.8 1.0 C A:ASP497 4.8 87.5 1.0 CA A:ASP495 4.8 84.8 1.0 CA A:ASP497 4.9 87.5 1.0

C.Bernecky, J.M.Plitzko, P.Cramer. Structure of A Transcribing Rna Polymerase II-Dsif Complex Reveals A Multidentate Dna-Rna Clamp. Nat. Struct. Mol. Biol. V. 24 809 2017.
ISSN: ESSN 1545-9985
PubMed: 28892040
DOI: 10.1038/NSMB.3465