Atomistry » Magnesium » PDB 5odz-5onh » 5oik
Atomistry »
  Magnesium »
    PDB 5odz-5onh »
      5oik »

Magnesium in PDB 5oik: Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex

Enzymatic activity of Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex

All present enzymatic activity of Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex:
2.7.7.6;

Other elements in 5oik:

The structure of Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex (pdb code 5oik). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex, PDB code: 5oik:

Magnesium binding site 1 out of 1 in 5oik

Go back to Magnesium Binding Sites List in 5oik
Magnesium binding site 1 out of 1 in the Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of An Rna Polymerase II-Dsif Transcription Elongation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2003

b:0.1
occ:1.00
O3' P:C50 2.1 0.3 1.0
OD1 A:ASP495 2.2 92.9 1.0
OD1 A:ASP497 2.4 92.8 1.0
CG A:ASP495 3.1 92.9 1.0
CG A:ASP497 3.2 92.8 1.0
OD1 A:ASP499 3.3 91.2 1.0
OD2 A:ASP495 3.4 92.9 1.0
OD2 A:ASP497 3.4 92.8 1.0
C3' P:C50 3.5 0.3 1.0
OD2 A:ASP499 3.6 91.2 1.0
CG A:ASP499 3.8 91.2 1.0
O A:ASP495 3.8 84.8 1.0
O A:ASP497 3.9 87.5 1.0
C4' P:C50 4.2 0.3 1.0
O2' P:C50 4.4 0.3 1.0
CB A:ASP495 4.5 92.9 1.0
C2' P:C50 4.5 0.3 1.0
C A:ASP495 4.5 84.8 1.0
N A:ASP497 4.6 87.5 1.0
C5' P:C50 4.6 0.3 1.0
CB A:ASP497 4.6 92.8 1.0
N A:ASP495 4.6 84.8 1.0
C A:ASP497 4.8 87.5 1.0
CA A:ASP495 4.8 84.8 1.0
CA A:ASP497 4.9 87.5 1.0

Reference:

C.Bernecky, J.M.Plitzko, P.Cramer. Structure of A Transcribing Rna Polymerase II-Dsif Complex Reveals A Multidentate Dna-Rna Clamp. Nat. Struct. Mol. Biol. V. 24 809 2017.
ISSN: ESSN 1545-9985
PubMed: 28892040
DOI: 10.1038/NSMB.3465
Page generated: Mon Dec 14 20:59:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy