Magnesium in PDB 5ok0: Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Trapped with Native Reaction Intermediate Beta- Glucose 1,6-Bisphosphate to 2.2A Resolution.

Enzymatic activity of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Trapped with Native Reaction Intermediate Beta- Glucose 1,6-Bisphosphate to 2.2A Resolution.

All present enzymatic activity of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Trapped with Native Reaction Intermediate Beta- Glucose 1,6-Bisphosphate to 2.2A Resolution.:
5.4.2.6;

Protein crystallography data

The structure of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Trapped with Native Reaction Intermediate Beta- Glucose 1,6-Bisphosphate to 2.2A Resolution., PDB code: 5ok0 was solved by A.J.Robertson, C.Bisson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.51 / 2.15
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	36.810, 54.940, 103.340, 90.00, 90.00, 90.00
*R / R_free (%)*	22 / 29.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Trapped with Native Reaction Intermediate Beta- Glucose 1,6-Bisphosphate to 2.2A Resolution. (pdb code 5ok0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Trapped with Native Reaction Intermediate Beta- Glucose 1,6-Bisphosphate to 2.2A Resolution., PDB code: 5ok0:

Magnesium binding site 1 out of 1 in 5ok0

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Magnesium Binding Sites List in 5ok0

Magnesium binding site 1 out of 1 in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Trapped with Native Reaction Intermediate Beta- Glucose 1,6-Bisphosphate to 2.2A Resolution.

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Trapped with Native Reaction Intermediate Beta- Glucose 1,6-Bisphosphate to 2.2A Resolution. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg302 b:46.6 occ:1.00	O	A:HOH441	1.9	41.6	1.0
	O	A:HOH432	2.2	50.0	1.0
	O1P	A:B16301	2.2	38.5	0.8
	OD2	A:ASP8	2.2	33.4	1.0
	O	A:ASN10	2.5	30.7	1.0
	OD1	A:ASP170	2.6	26.1	1.0
	CG	A:ASP8	3.0	32.5	1.0
	OD1	A:ASP8	3.2	36.3	1.0
	P	A:B16301	3.6	40.5	0.8
	C	A:ASN10	3.7	26.5	1.0
	CG	A:ASP170	3.7	27.8	1.0
	OE1	A:GLU169	3.8	30.5	1.0
	OD2	A:ASP170	4.2	28.4	1.0
	O3P	A:B16301	4.3	35.9	0.8
	CA	A:ASN10	4.3	27.2	1.0
	CB	A:ASN10	4.3	26.8	1.0
	OE2	A:GLU169	4.4	29.7	1.0
	O2P	A:B16301	4.4	33.8	0.8
	O	A:HOH447	4.4	28.9	1.0
	N	A:ASN10	4.4	26.0	1.0
	CD	A:GLU169	4.4	28.8	1.0
	CB	A:ASP8	4.4	30.1	1.0
	N	A:GLY46	4.6	37.6	1.0
	OG	A:SER171	4.6	34.8	1.0
	O6	A:B16301	4.7	39.0	0.8
	CB	A:SER171	4.7	33.0	1.0
	N	A:GLY11	4.7	25.6	1.0
	CB	A:ASP170	4.9	26.7	1.0
	N	A:ASP170	4.9	25.1	1.0
	NZ	A:LYS145	5.0	37.6	1.0

Reference:

L.A.Johnson, A.J.Robertson, N.J.Baxter, C.R.Trevitt, C.Bisson, Y.Jin, H.P.Wood, A.M.Hounslow, M.J.Cliff, G.M.Blackburn, M.W.Bowler, J.P.Waltho. Van Der Waals Contact Between Nucleophile and Transferring Phosphorus Is Insufficient to Achieve Enzyme Transition-State Architecture Acs Catalysis 2018.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.8B01612

Page generated: Mon Sep 30 01:01:19 2024

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