Atomistry » Magnesium » PDB 5odz-5onh » 5ok2
Atomistry »
  Magnesium »
    PDB 5odz-5onh »
      5ok2 »

Magnesium in PDB 5ok2: Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.

Enzymatic activity of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.

All present enzymatic activity of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.:
5.4.2.6;

Protein crystallography data

The structure of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution., PDB code: 5ok2 was solved by A.J.Robertson, C.Bisson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.39 / 1.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.540, 54.280, 104.670, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 17

Other elements in 5ok2:

The structure of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution. also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution. (pdb code 5ok2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution., PDB code: 5ok2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5ok2

Go back to Magnesium Binding Sites List in 5ok2
Magnesium binding site 1 out of 2 in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg308

b:8.1
occ:1.00
 F1 A:ALF301 2.0 8.2 1.0
OD2 A:ASP8 2.0 8.6 1.0
OD1 A:ASP170 2.0 8.5 1.0
O A:HOH431 2.1 9.5 1.0
O A:ASN10 2.1 8.5 1.0
O A:HOH463 2.1 9.3 1.0
CG A:ASP8 3.0 8.2 1.0
CG A:ASP170 3.0 8.6 1.0
C A:ASN10 3.3 7.4 1.0
OD2 A:ASP170 3.4 9.3 1.0
OD1 A:ASP8 3.4 8.4 1.0
AL A:ALF301 3.5 8.2 1.0
F2 A:ALF301 3.6 8.9 1.0
O2 A:BG6310 3.8 8.8 1.0
CA A:ASN10 4.0 7.9 1.0
OE1 A:GLU169 4.0 11.9 1.0
N A:ASN10 4.0 7.7 1.0
CB A:ASN10 4.1 8.1 1.0
F4 A:ALF301 4.2 8.4 1.0
N A:GLY11 4.3 7.7 1.0
CB A:ASP8 4.3 8.2 1.0
CB A:ASP170 4.4 8.8 1.0
N A:ASP170 4.5 8.8 1.0
O1 A:BG6310 4.6 8.3 1.0
CA A:GLY11 4.6 8.7 1.0
O A:HOH537 4.6 10.3 1.0
C A:LEU9 4.8 7.0 0.5
CG2 A:VAL12 4.8 10.0 1.0
C A:LEU9 4.8 7.4 0.5
CB A:SER171 4.8 10.4 1.0
CD A:GLU169 4.8 11.1 1.0
CA A:ASP170 4.9 8.9 1.0
N A:GLY46 4.9 9.5 1.0
OG A:SER171 4.9 11.1 1.0
C A:GLY11 5.0 9.3 1.0
C2 A:BG6310 5.0 8.7 1.0
N A:SER171 5.0 9.4 1.0

Magnesium binding site 2 out of 2 in 5ok2

Go back to Magnesium Binding Sites List in 5ok2
Magnesium binding site 2 out of 2 in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg309

b:16.9
occ:0.50
 O A:HOH428 2.1 27.4 1.0
O A:HOH630 2.1 25.2 0.5
O A:HOH633 2.1 23.8 0.5
O A:HOH597 2.1 24.8 1.0
O A:HOH642 2.1 20.0 0.5
O A:THR129 4.2 11.3 1.0
CA A:GLY130 4.2 11.8 1.0
O A:HOH401 4.3 26.2 1.0
CG2 A:THR129 4.6 14.4 1.0
C A:THR129 4.6 10.0 1.0
O A:HOH598 4.6 40.4 1.0
N A:GLY130 4.6 10.6 1.0
O A:PHE132 4.8 14.7 1.0
C A:GLY130 4.9 12.3 1.0

Reference:

L.A.Johnson, A.J.Robertson, N.J.Baxter, C.R.Trevitt, C.Bisson, Y.Jin, H.P.Wood, A.M.Hounslow, M.J.Cliff, G.M.Blackburn, M.W.Bowler, J.P.Waltho. Van Der Waals Contact Between Nucleophile and Transferring Phosphorus Is Insufficient to Achieve Enzyme Transition-State Architecture Acs Catalysis 2018.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.8B01612
Page generated: Mon Sep 30 01:01:44 2024

Last articles

Mg in 8AVQ
Mg in 8ASA
Mg in 8AV7
Mg in 8AV8
Mg in 8AV4
Mg in 8AV3
Mg in 8AV0
Mg in 8AV5
Mg in 8AUY
Mg in 8AU2
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy