Magnesium in PDB 5onv: Cryo-Em Structure of F-Actin in Complex with Adp

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin in Complex with Adp (pdb code 5onv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin in Complex with Adp, PDB code: 5onv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:65.3 occ:1.00 O1B A:ADP401 2.0 53.5 1.0 PB A:ADP401 3.4 51.4 1.0 OE1 A:GLN137 3.6 79.4 1.0 O1A A:ADP401 3.9 58.6 1.0 O3B A:ADP401 4.0 58.0 1.0 OD1 A:ASP154 4.1 67.3 1.0 CD A:GLN137 4.2 82.2 1.0 OD2 A:ASP154 4.3 72.5 1.0 O2B A:ADP401 4.3 56.3 1.0 O3A A:ADP401 4.4 54.9 1.0 CG A:ASP154 4.6 71.6 1.0 PA A:ADP401 4.7 55.6 1.0 OD1 A:ASP11 4.8 71.7 1.0 NE2 A:GLN137 4.8 78.0 1.0 CG2 A:VAL339 4.8 71.5 1.0 OD2 A:ASP11 4.9 80.6 1.0 CA A:GLY156 5.0 58.5 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:69.7 occ:1.00 O1B B:ADP401 2.0 55.1 1.0 PB B:ADP401 3.4 56.7 1.0 OE1 B:GLN137 3.6 65.1 1.0 O1A B:ADP401 3.9 57.2 1.0 O3B B:ADP401 4.0 61.9 1.0 OD2 B:ASP154 4.1 59.3 1.0 CD B:GLN137 4.2 67.5 1.0 OD1 B:ASP154 4.3 62.4 1.0 O2B B:ADP401 4.3 56.1 1.0 O3A B:ADP401 4.4 54.2 1.0 CG B:ASP154 4.6 60.3 1.0 PA B:ADP401 4.7 55.3 1.0 OD1 B:ASP11 4.8 65.2 1.0 NE2 B:GLN137 4.8 66.0 1.0 CG2 B:VAL339 4.8 67.0 1.0 OD2 B:ASP11 4.9 69.2 1.0 CA B:GLY156 5.0 56.3 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:63.5 occ:1.00 O1B C:ADP401 2.0 49.6 1.0 PB C:ADP401 3.4 54.7 1.0 OE1 C:GLN137 3.6 63.2 1.0 O1A C:ADP401 3.9 56.6 1.0 O3B C:ADP401 4.0 62.2 1.0 OD1 C:ASP154 4.1 61.8 1.0 CD C:GLN137 4.2 66.0 1.0 OD2 C:ASP154 4.3 66.8 1.0 O2B C:ADP401 4.3 52.1 1.0 O3A C:ADP401 4.4 53.0 1.0 CG C:ASP154 4.6 63.6 1.0 PA C:ADP401 4.7 52.8 1.0 OD1 C:ASP11 4.8 55.9 1.0 NE2 C:GLN137 4.8 65.5 1.0 CG2 C:VAL339 4.8 54.8 1.0 OD2 C:ASP11 4.9 63.5 1.0 CA C:GLY156 5.0 59.1 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:53.7 occ:1.00 O1B D:ADP401 2.0 49.6 1.0 PB D:ADP401 3.4 60.0 1.0 OE1 D:GLN137 3.6 71.4 1.0 O1A D:ADP401 3.9 55.8 1.0 O3B D:ADP401 4.0 64.0 1.0 OD1 D:ASP154 4.1 59.7 1.0 CD D:GLN137 4.2 72.2 1.0 OD2 D:ASP154 4.3 66.1 1.0 O2B D:ADP401 4.3 57.2 1.0 O3A D:ADP401 4.4 52.6 1.0 CG D:ASP154 4.6 63.6 1.0 PA D:ADP401 4.7 52.5 1.0 OD1 D:ASP11 4.8 61.7 1.0 NE2 D:GLN137 4.8 66.1 1.0 CG2 D:VAL339 4.8 56.4 1.0 OD2 D:ASP11 4.9 63.7 1.0 CA D:GLY156 5.0 59.1 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:67.0 occ:1.00 O1B E:ADP401 2.0 57.7 1.0 PB E:ADP401 3.4 63.0 1.0 OE1 E:GLN137 3.6 72.2 1.0 O1A E:ADP401 3.9 63.3 1.0 O3B E:ADP401 4.0 69.5 1.0 OD1 E:ASP154 4.1 68.4 1.0 CD E:GLN137 4.2 75.9 1.0 OD2 E:ASP154 4.3 73.9 1.0 O2B E:ADP401 4.3 63.8 1.0 O3A E:ADP401 4.4 61.4 1.0 CG E:ASP154 4.6 69.6 1.0 PA E:ADP401 4.7 59.7 1.0 OD1 E:ASP11 4.8 75.8 1.0 NE2 E:GLN137 4.8 74.8 1.0 CG2 E:VAL339 4.8 64.0 1.0 OD2 E:ASP11 4.9 79.0 1.0 CA E:GLY156 5.0 63.4 1.0

F.Merino, S.Pospich, J.Funk, T.Wagner, F.Kullmer, H.D.Arndt, P.Bieling, S.Raunser. Structural Transitions of F-Actin Upon Atp Hydrolysis at Near-Atomic Resolution Revealed By Cryo-Em. Nat. Struct. Mol. Biol. V. 25 528 2018.
ISSN: ESSN 1545-9985
PubMed: 29867215
DOI: 10.1038/S41594-018-0074-0