Magnesium in PDB 5ooe: Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp)

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp) (pdb code 5ooe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp), PDB code: 5ooe:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:43.2 occ:1.00 O1G A:ANP401 1.9 37.5 1.0 O1B A:ANP401 2.0 40.5 1.0 PB A:ANP401 3.3 35.3 1.0 PG A:ANP401 3.3 39.3 1.0 N3B A:ANP401 3.8 33.2 1.0 OE1 A:GLN137 4.0 46.9 1.0 O2G A:ANP401 4.1 38.2 1.0 O2B A:ANP401 4.2 37.3 1.0 O3A A:ANP401 4.3 32.9 1.0 OD2 A:ASP11 4.3 48.6 1.0 CD A:GLN137 4.3 47.8 1.0 OD1 A:ASP154 4.3 40.7 1.0 OD2 A:ASP154 4.4 45.9 1.0 O3G A:ANP401 4.5 38.0 1.0 OD1 A:ASP11 4.5 48.2 1.0 O1A A:ANP401 4.6 35.9 1.0 NE2 A:GLN137 4.7 46.9 1.0 NZ A:LYS18 4.7 41.5 1.0 CG2 A:VAL339 4.8 38.6 1.0 CG A:ASP154 4.8 43.6 1.0 CG A:ASP11 4.8 51.8 1.0 CG A:GLN137 4.9 41.0 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:49.1 occ:1.00 O1G B:ANP401 1.9 42.4 1.0 O1B B:ANP401 2.0 43.4 1.0 PB B:ANP401 3.3 36.6 1.0 PG B:ANP401 3.3 43.9 1.0 N3B B:ANP401 3.8 36.8 1.0 OE1 B:GLN137 4.0 40.9 1.0 O2G B:ANP401 4.1 40.7 1.0 O2B B:ANP401 4.2 35.5 1.0 O3A B:ANP401 4.3 33.9 1.0 OD2 B:ASP11 4.3 46.3 1.0 CD B:GLN137 4.3 45.3 1.0 OD1 B:ASP154 4.3 41.1 1.0 OD2 B:ASP154 4.4 40.2 1.0 O3G B:ANP401 4.5 43.7 1.0 OD1 B:ASP11 4.5 39.9 1.0 O1A B:ANP401 4.6 39.1 1.0 NE2 B:GLN137 4.7 47.3 1.0 NZ B:LYS18 4.7 37.6 1.0 CG2 B:VAL339 4.8 38.4 1.0 CG B:ASP154 4.8 39.1 1.0 CG B:ASP11 4.8 45.9 1.0 CG B:GLN137 4.9 37.4 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:44.0 occ:1.00 O1G C:ANP401 1.9 37.0 1.0 O1B C:ANP401 2.0 39.6 1.0 PB C:ANP401 3.3 29.1 1.0 PG C:ANP401 3.3 38.7 1.0 N3B C:ANP401 3.8 31.6 1.0 OE1 C:GLN137 4.0 46.2 1.0 O2G C:ANP401 4.1 39.7 1.0 O2B C:ANP401 4.2 34.5 1.0 O3A C:ANP401 4.3 29.8 1.0 OD2 C:ASP11 4.3 38.4 1.0 CD C:GLN137 4.3 45.6 1.0 OD1 C:ASP154 4.3 42.0 1.0 OD2 C:ASP154 4.4 41.6 1.0 O3G C:ANP401 4.5 37.7 1.0 OD1 C:ASP11 4.5 38.6 1.0 O1A C:ANP401 4.6 32.8 1.0 NE2 C:GLN137 4.7 41.9 1.0 NZ C:LYS18 4.7 38.1 1.0 CG2 C:VAL339 4.8 38.6 1.0 CG C:ASP154 4.8 43.1 1.0 CG C:ASP11 4.8 38.0 1.0 CG C:GLN137 4.9 39.1 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:50.3 occ:1.00 O1G D:ANP401 1.9 44.5 1.0 O1B D:ANP401 2.0 42.0 1.0 PB D:ANP401 3.3 35.6 1.0 PG D:ANP401 3.3 43.8 1.0 N3B D:ANP401 3.8 38.5 1.0 OE1 D:GLN137 4.0 43.6 1.0 O2G D:ANP401 4.1 41.2 1.0 O2B D:ANP401 4.2 38.1 1.0 O3A D:ANP401 4.3 35.1 1.0 OD2 D:ASP11 4.3 46.1 1.0 CD D:GLN137 4.3 44.0 1.0 OD1 D:ASP154 4.3 42.1 1.0 OD2 D:ASP154 4.4 40.9 1.0 O3G D:ANP401 4.5 41.1 1.0 OD1 D:ASP11 4.5 45.1 1.0 O1A D:ANP401 4.6 36.7 1.0 NE2 D:GLN137 4.7 44.6 1.0 NZ D:LYS18 4.7 42.7 1.0 CG2 D:VAL339 4.8 38.1 1.0 CG D:ASP154 4.8 43.3 1.0 CG D:ASP11 4.8 47.2 1.0 CG D:GLN137 4.9 38.4 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin in Complex with Appnhp (Amppnp) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:52.8 occ:1.00 O1G E:ANP401 1.9 46.6 1.0 O1B E:ANP401 2.0 44.0 1.0 PB E:ANP401 3.3 37.4 1.0 PG E:ANP401 3.3 43.7 1.0 N3B E:ANP401 3.8 38.8 1.0 OE1 E:GLN137 4.0 47.5 1.0 O2G E:ANP401 4.1 45.3 1.0 O2B E:ANP401 4.2 41.2 1.0 O3A E:ANP401 4.3 37.2 1.0 OD2 E:ASP11 4.3 44.1 1.0 CD E:GLN137 4.3 47.4 1.0 OD2 E:ASP154 4.3 43.6 1.0 OD1 E:ASP154 4.4 41.3 1.0 O3G E:ANP401 4.5 39.2 1.0 OD1 E:ASP11 4.5 46.5 1.0 O1A E:ANP401 4.6 38.1 1.0 NE2 E:GLN137 4.7 47.6 1.0 NZ E:LYS18 4.7 47.0 1.0 CG2 E:VAL339 4.8 38.4 1.0 CG E:ASP154 4.8 42.1 1.0 CG E:ASP11 4.8 46.6 1.0 CG E:GLN137 4.9 41.1 1.0

F.Merino, S.Pospich, J.Funk, T.Wagner, F.Kullmer, H.D.Arndt, P.Bieling, S.Raunser. Structural Transitions of F-Actin Upon Atp Hydrolysis at Near-Atomic Resolution Revealed By Cryo-Em. Nat. Struct. Mol. Biol. V. 25 528 2018.
ISSN: ESSN 1545-9985
PubMed: 29867215
DOI: 10.1038/S41594-018-0074-0