Atomistry » Magnesium » PDB 5onv-5ose » 5oqm
Atomistry »
  Magnesium »
    PDB 5onv-5ose »
      5oqm »

Magnesium in PDB 5oqm: Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator

Enzymatic activity of Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator

All present enzymatic activity of Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator:
2.7.7.6; 3.6.4.12;

Other elements in 5oqm:

The structure of Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator also contains other interesting chemical elements:

Zinc (Zn) 16 atoms
Iron (Fe) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator (pdb code 5oqm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator, PDB code: 5oqm:

Magnesium binding site 1 out of 1 in 5oqm

Go back to Magnesium Binding Sites List in 5oqm
Magnesium binding site 1 out of 1 in the Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:0.0
occ:1.00
OD1 A:ASP485 2.3 0.0 1.0
OD2 A:ASP485 2.4 0.0 1.0
CG A:ASP485 2.7 0.0 1.0
OD1 A:ASP481 2.8 0.0 1.0
OD2 A:ASP483 3.3 0.0 1.0
CG A:ASP481 3.6 0.0 1.0
OD2 A:ASP481 3.6 0.0 1.0
OD1 A:ASP483 3.7 0.0 1.0
CG A:ASP483 3.8 0.0 1.0
NH2 A:ARG446 4.1 0.0 1.0
CB A:ASP485 4.1 0.0 1.0
O A:ASP481 4.4 0.0 1.0
O A:ASP483 4.5 0.0 1.0
CA A:ASP485 4.8 0.0 1.0
N A:ASP481 4.9 0.0 1.0
CB A:ASP481 5.0 0.0 1.0
N A:ASP485 5.0 0.0 1.0

Reference:

S.Schilbach, M.Hantsche, D.Tegunov, C.Dienemann, C.Wigge, H.Urlaub, P.Cramer. Structures of Transcription Pre-Initiation Complex with Tfiih and Mediator. Nature V. 551 204 2017.
ISSN: ESSN 1476-4687
PubMed: 29088706
DOI: 10.1038/NATURE24282
Page generated: Mon Sep 30 01:08:16 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy