Magnesium in PDB 5ovo: Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense

The structure of Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense, PDB code: 5ovo was solved by C.L.Berthold, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.60 / 1.55
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	116.740, 116.740, 105.616, 90.00, 90.00, 120.00
R / Rfree (%)	14.4 / 16.5

The structure of Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Magnesium atom in the Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense (pdb code 5ovo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense, PDB code: 5ovo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:19.8 occ:1.00 OD2 A:ASP245 2.7 16.1 1.0 O A:HOH514 2.8 17.4 1.0 O A:HOH531 2.9 22.8 1.0 OG1 A:THR246 3.0 10.4 1.0 OD1 A:ASP243 3.0 12.2 1.0 OD1 A:ASP245 3.1 10.8 1.0 CG A:ASP245 3.2 11.3 1.0 O A:HOH704 3.2 26.4 1.0 O A:HOH566 3.4 19.8 1.0 OE2 A:GLU28 3.4 13.4 1.0 O A:HOH757 3.5 28.8 1.0 O A:HOH528 3.8 19.3 1.0 OD1 A:ASP61 3.9 14.3 1.0 OD1 A:ASP60 3.9 14.4 1.0 CG A:ASP243 3.9 11.2 1.0 OD2 A:ASP60 4.0 12.9 1.0 OD2 A:ASP243 4.0 12.2 1.0 CB A:THR246 4.3 10.0 1.0 CG A:ASP60 4.3 11.6 1.0 CD A:GLU28 4.3 13.6 1.0 N A:THR246 4.6 9.3 1.0 OD2 A:ASP61 4.7 19.7 1.0 CB A:ASP245 4.7 9.2 1.0 CG A:ASP61 4.7 13.5 1.0 OE1 A:GLU28 4.7 14.0 1.0 O A:HOH505 4.9 25.6 1.0 O A:HOH558 4.9 18.1 1.0 CA A:THR246 5.0 9.3 1.0

Magnesium binding site 2 out of 2 in the Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:21.9 occ:1.00 N A:GLY125 2.8 11.5 1.0 O1B A:ADP301 2.9 17.3 1.0 O A:TYR122 2.9 14.5 1.0 OG1 A:THR101 3.1 12.2 1.0 CA A:HIS123 3.4 12.0 1.0 CA A:GLY125 3.4 10.8 1.0 C A:HIS123 3.4 13.0 1.0 N A:ALA124 3.5 12.8 1.0 CB A:THR101 3.7 10.8 1.0 CD2 A:HIS158 3.7 10.2 1.0 NE2 A:HIS158 3.8 10.8 1.0 C5' A:ADP301 3.8 14.0 1.0 C8 A:ADP301 3.8 16.9 1.0 CG2 A:THR101 3.8 10.7 1.0 C A:TYR122 3.8 15.2 1.0 O A:HOH627 3.9 25.4 1.0 C A:ALA124 3.9 11.3 1.0 O A:HIS123 4.0 12.1 1.0 N A:HIS123 4.0 12.8 1.0 O1A A:ADP301 4.2 15.9 1.0 PB A:ADP301 4.3 14.4 1.0 CA A:ALA124 4.3 12.5 1.0 C A:GLY125 4.4 9.5 1.0 O4' A:ADP301 4.4 15.2 1.0 N7 A:ADP301 4.5 17.6 1.0 CB A:HIS123 4.6 10.8 1.0 O A:HOH543 4.6 23.1 1.0 O A:GLY125 4.7 10.9 1.0 O A:HOH661 4.7 25.4 1.0 C4' A:ADP301 4.8 15.3 1.0 O3A A:ADP301 4.8 14.4 1.0 O5' A:ADP301 4.8 15.8 1.0 N9 A:ADP301 4.9 15.4 1.0 CG A:HIS158 4.9 10.2 1.0 PA A:ADP301 4.9 15.9 1.0 CE1 A:HIS158 4.9 10.4 1.0 CD2 A:HIS123 5.0 11.7 1.0

C.L.Berthold, M.Hogbom. Structure of Drag-Glnz-DELTA42-54 Complex From Azospirillum Brasilense To Be Published.