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Magnesium in PDB 5oy1: Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso

Enzymatic activity of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso

All present enzymatic activity of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso:
1.11.2.1;

Protein crystallography data

The structure of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso, PDB code: 5oy1 was solved by M.Ramirez-Escudero, J.Sanz-Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.02 / 1.43
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.084, 58.074, 60.811, 90.00, 109.94, 90.00
R / Rfree (%) 15.2 / 17

Other elements in 5oy1:

The structure of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso (pdb code 5oy1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso, PDB code: 5oy1:

Magnesium binding site 1 out of 1 in 5oy1

Go back to Magnesium Binding Sites List in 5oy1
Magnesium binding site 1 out of 1 in the Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:6.2
occ:1.00
 O A:HOH697 2.0 8.0 1.0
O2A A:HEM401 2.1 8.8 1.0
O A:HOH572 2.1 6.3 1.0
OE2 A:GLU122 2.1 8.4 1.0
OG A:SER126 2.1 7.0 1.0
O A:GLY123 2.1 7.4 1.0
CD A:GLU122 3.1 8.8 1.0
CGA A:HEM401 3.3 9.2 1.0
C A:GLY123 3.3 7.6 1.0
CB A:SER126 3.3 7.1 1.0
CG A:GLU122 3.6 9.0 1.0
N A:GLY123 3.8 8.5 1.0
O1A A:HEM401 3.8 9.9 1.0
CA A:GLY123 4.0 8.1 1.0
O A:HOH641 4.0 7.9 1.0
O A:HOH688 4.1 6.7 1.0
O A:HOH555 4.2 14.3 1.0
OE1 A:GLU122 4.2 8.8 1.0
O A:HOH522 4.3 7.0 1.0
N A:ASP124 4.3 7.3 1.0
O A:ASN137 4.4 9.1 1.0
CA A:SER126 4.4 7.2 1.0
N A:SER126 4.4 7.2 1.0
NH2 A:ARG189 4.5 8.5 1.0
CBA A:HEM401 4.5 8.7 1.0
CA A:ASP124 4.6 7.3 1.0
O A:GLY130 4.7 7.2 1.0
C A:GLU122 4.7 9.1 1.0
CAA A:HEM401 4.8 8.5 1.0
C A:ASP124 4.8 7.2 1.0
CB A:GLU122 4.8 9.3 1.0
CZ A:ARG189 4.9 8.7 1.0
CB A:ARG129 4.9 7.5 1.0
CB A:ASN137 5.0 8.8 1.0
O A:ASP124 5.0 7.2 1.0
CA A:GLU122 5.0 9.5 1.0

Reference:

M.Ramirez-Escudero, J.Sanz-Aparicio. Direct-Evolutioned Unspecific Peroxygenase From Agrocybe Aegerita, in Complex with Dmso To Be Published.
Page generated: Mon Dec 14 21:02:14 2020

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