Atomistry » Magnesium » PDB 5osf-5p9r » 5p99
Atomistry »
  Magnesium »
    PDB 5osf-5p9r »
      5p99 »

Magnesium in PDB 5p99: Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A

Enzymatic activity of Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A

All present enzymatic activity of Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A:
2.1.1.6;

Protein crystallography data

The structure of Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A, PDB code: 5p99 was solved by A.Ehler, C.Lerner, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.51 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.992, 53.941, 80.798, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 17.7

Other elements in 5p99:

The structure of Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A also contains other interesting chemical elements:

Fluorine (F) 1 atom
Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A (pdb code 5p99). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A, PDB code: 5p99:

Magnesium binding site 1 out of 1 in 5p99

Go back to Magnesium Binding Sites List in 5p99
Magnesium binding site 1 out of 1 in the Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rat Catechol O-Methyltransferase in Complex with N-[2-[2-(3,4- Dihydroxyphenyl)-2-Oxoethyl]Sulfanylethyl]-5-(4-Fluorophenyl)-2,3- Dihydroxybenzamide at 1.20A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:4.7
occ:1.00
 OD1 A:ASP141 2.1 4.8 1.0
O A:HOH425 2.1 5.8 1.0
OD2 A:ASP169 2.1 4.9 1.0
O14 A:77M303 2.1 4.7 1.0
O15 A:77M303 2.1 4.8 1.0
OD1 A:ASN170 2.1 4.7 1.0
C1 A:77M303 2.9 4.2 1.0
C6 A:77M303 2.9 5.0 1.0
CG A:ASP141 3.0 5.1 1.0
CG A:ASN170 3.1 3.7 1.0
CG A:ASP169 3.2 5.2 1.0
OD2 A:ASP141 3.3 6.7 1.0
ND2 A:ASN170 3.4 5.2 1.0
CB A:ASP169 3.8 4.7 1.0
NZ A:LYS144 3.8 4.9 1.0
O A:HOH548 4.0 13.4 1.0
OD1 A:ASP169 4.2 5.7 1.0
C2 A:77M303 4.2 4.8 1.0
OE2 A:GLU199 4.2 5.1 1.0
C5 A:77M303 4.3 5.8 1.0
O A:MET40 4.4 6.9 1.0
CB A:ASP141 4.4 4.4 1.0
CB A:ASN170 4.4 4.9 1.0
O A:ASP141 4.6 5.8 1.0
CE A:LYS144 4.7 5.6 1.0
N17 A:77M303 4.8 6.1 1.0
OE1 A:GLU199 4.8 5.8 1.0
NZ A:LYS46 4.8 6.5 1.0
CA A:ASP141 4.8 3.6 1.0
CG2 A:VAL42 4.9 5.4 0.5
CD A:GLU199 5.0 4.4 1.0

Reference:

C.Lerner, M.G.Rudolph. Crystal Structure of A Comt Complex To Be Published.
Page generated: Mon Sep 30 01:28:03 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy