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Magnesium in PDB 5p9x: Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide

Enzymatic activity of Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide

All present enzymatic activity of Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide:
2.1.1.6;

Protein crystallography data

The structure of Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide, PDB code: 5p9x was solved by A.Ehler, C.Lerner, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.49 / 1.12
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.964, 54.087, 80.776, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 18.4

Other elements in 5p9x:

The structure of Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide also contains other interesting chemical elements:

Fluorine (F) 1 atom
Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide (pdb code 5p9x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide, PDB code: 5p9x:

Magnesium binding site 1 out of 1 in 5p9x

Go back to Magnesium Binding Sites List in 5p9x
Magnesium binding site 1 out of 1 in the Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Humanized Rat Catechol O-Methyltransferase in Complex with N-[1-[(2R, 3S,4R,5R)-5-(6-Aminopurin-9-Yl)-3,4-Dihydroxyoxolan-2-Yl]Propan-2- Yl]-5-(4-Fluorophenyl)-2,3-Dihydroxybenzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:7.4
occ:1.00
 O A:HOH436 2.1 7.9 1.0
OD1 A:ASP141 2.1 7.5 1.0
O18 A:7JO306 2.1 7.9 1.0
OD2 A:ASP169 2.1 8.0 1.0
O17 A:7JO306 2.1 7.7 1.0
OD1 A:ASN170 2.1 7.7 1.0
C9 A:7JO306 2.9 7.0 1.0
C10 A:7JO306 2.9 7.2 1.0
CG A:ASP141 3.0 7.8 1.0
CG A:ASN170 3.1 8.3 1.0
CG A:ASP169 3.2 8.9 1.0
OD2 A:ASP141 3.3 10.6 1.0
ND2 A:ASN170 3.4 8.2 1.0
CB A:ASP169 3.8 8.2 1.0
NZ A:LYS144 3.8 8.4 1.0
OD1 A:ASP169 4.2 8.6 1.0
C8 A:7JO306 4.2 7.6 1.0
O A:HOH522 4.2 19.0 1.0
OE2 A:GLU199 4.2 7.7 1.0
C11 A:7JO306 4.3 7.5 1.0
O A:MET40 4.3 9.4 1.0
CB A:ASP141 4.4 8.1 1.0
CB A:ASN170 4.5 7.3 1.0
O A:ASP141 4.6 9.8 1.0
CE A:LYS144 4.7 7.9 1.0
CG2 A:VAL42 4.7 12.1 0.5
N15 A:7JO306 4.8 8.2 1.0
NZ A:LYS46 4.8 8.9 1.0
OE1 A:GLU199 4.8 8.1 1.0
CA A:ASP141 4.9 7.4 1.0
CD A:GLU199 5.0 7.6 1.0

Reference:

C.Lerner, R.Jakob-Roetne, K.Groebke-Zbinden, B.Buettelmann, M.G.Rudolph. Crystal Structure of A Comt Complex To Be Published.
Page generated: Mon Dec 14 21:03:42 2020

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