Atomistry » Magnesium » PDB 5r9j-5s4v » 5rx0
Atomistry »
  Magnesium »
    PDB 5r9j-5s4v »
      5rx0 »

Magnesium in PDB 5rx0: INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z57258487

Enzymatic activity of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z57258487

All present enzymatic activity of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z57258487:
3.1.3.36; 3.1.3.56; 3.1.3.86;

Protein crystallography data

The structure of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z57258487, PDB code: 5rx0 was solved by W.J.Bradshaw, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.09 / 1.43
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.560, 79.340, 89.420, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 20.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z57258487 (pdb code 5rx0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z57258487, PDB code: 5rx0:

Magnesium binding site 1 out of 1 in 5rx0

Go back to Magnesium Binding Sites List in 5rx0
Magnesium binding site 1 out of 1 in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z57258487


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z57258487 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg906

b:14.9
occ:0.99
 O2 A:PO4905 2.0 14.3 1.0
O A:HOH1081 2.0 14.4 1.0
O A:HOH1188 2.1 19.2 1.0
O A:HOH1050 2.1 16.3 1.0
O A:HOH1164 2.1 15.9 1.0
OE2 A:GLU452 2.2 14.9 1.0
CD A:GLU452 3.1 16.2 1.0
OE1 A:GLU452 3.3 17.6 1.0
P A:PO4905 3.3 15.8 1.0
O3 A:PO4905 3.7 15.5 1.0
ND2 A:ASN411 4.0 12.7 1.0
O4 A:PO4905 4.1 16.0 1.0
O A:HOH1266 4.1 31.3 1.0
NE2 A:HIS700 4.2 12.0 1.0
OD2 A:ASP699 4.2 15.3 1.0
OD1 A:ASP699 4.2 14.7 1.0
OD1 A:ASN411 4.3 11.9 1.0
OH A:TYR643 4.3 12.6 1.0
O1 A:PO4905 4.5 15.5 1.0
CG A:GLU452 4.5 12.8 1.0
CG A:ASN411 4.5 12.5 1.0
CD2 A:HIS700 4.6 11.3 1.0
CG A:ASP699 4.7 14.5 1.0
CE1 A:TYR643 4.7 11.7 1.0
CZ A:TYR643 4.9 12.2 1.0

Reference:

W.J.Bradshaw, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi. INPP5D Pandda Analysis Group Deposition To Be Published.
Page generated: Mon Sep 30 02:40:52 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy